sncRNA detail

ENST00000666735.2_72_128_+

Derived from ENST00000666735.2 • Homo Sapiens

94 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
ENST00000666735
Gene
ENSG00000285646 (ENSG00000285646.3)
Precursor type
lncRNA
Sequence
AAACGAGTGTGAGTCTGAAACCAATTTTTTGAGGCCTTGCGTTTCTTAGCAGGGCTT
Start
Start: 72
End
End: 128
Length
Length: 57
Expression (sum)
39916.00
Expression fraction
3.78
Expression (Avg non-zero)
424.64
Expression (max)
5648.00
Expression (CPM sum)
1.02
Expression (CPM avg non-zero)
1.13
Expression (CPM max)
6.78
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
ENST00000666735
Transcript ID
ENST00000666735.2
Chromosome
chr1
Genomic start
11908145
Genomic end
11909330

Gene context

Gene name
ENSG00000285646
Gene ID
ENSG00000285646.3
Gene type
lncRNA

Expression table

Showing 94 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REE GM12878 (Cell line) 392.00 2.77 1.01 100.00
ENCFF001REL K562 (Cell line) 1200.00 3.11 2.23 100.00
ENCFF001REQ K562 (Cell line) 3193.00 5.94 8.10 100.00
ENCFF001RER GM12878 (Cell line) 1039.00 3.37 2.15 100.00
ENCFF001RLS parietal lobe (Tissue) 10.00 0.07 0.04 100.00
ENCFF001RLT temporal lobe (Tissue) 619.00 1.22 1.03 100.00
ENCFF001RLU spinal cord (Tissue) 166.00 1.06 0.56 100.00
ENCFF001RLV tongue (Tissue) 4.00 0.04 0.01 100.00
ENCFF001RLW occipital lobe (Tissue) 43.00 1.11 0.14 100.00
ENCFF001RLX spinal cord (Tissue) 18.00 0.09 0.03 100.00
ENCFF001RLY diencephalon (Tissue) 108.00 1.66 0.31 100.00
ENCFF001RLZ heart (Tissue) 496.00 3.61 0.47 100.00
ENCFF001RMA skin of body (Tissue) 180.00 0.98 0.44 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 259.00 2.32 0.84 100.00
ENCFF001RMC temporal lobe (Tissue) 15.00 0.05 0.03 100.00
ENCFF001RMD uterus (Tissue) 4.00 0.02 0.01 100.00
ENCFF001RME occipital lobe (Tissue) 78.00 3.17 0.17 100.00
ENCFF001RMF metanephros (Tissue) 188.00 3.58 0.35 100.00
ENCFF001RMG parietal lobe (Tissue) 119.00 1.68 0.51 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 48.00 1.11 0.21 100.00
ENCFF001RMJ skin of body (Tissue) 4.00 0.06 0.01 100.00
ENCFF001RMK heart (Tissue) 110.00 1.92 0.19 100.00
ENCFF001RML cerebellum (Tissue) 199.00 1.80 0.37 100.00
ENCFF001RMM frontal cortex (Tissue) 101.00 1.26 0.17 100.00
ENCFF001RMN uterus (Tissue) 339.00 2.89 0.65 100.00
ENCFF001RMO cerebellum (Tissue) 168.00 2.59 0.32 100.00
ENCFF001RMP frontal cortex (Tissue) 157.00 1.46 0.25 100.00
ENCFF001RMQ lung (Tissue) 122.00 0.92 0.18 100.00
ENCFF001RMR thyroid gland (Tissue) 331.00 1.97 0.74 100.00
ENCFF001RMS diencephalon (Tissue) 164.00 1.26 0.34 100.00
ENCFF001RMT thyroid gland (Tissue) 644.00 2.44 0.85 100.00
ENCFF001RMU metanephros (Tissue) 1.00 0.06 0.00 100.00
ENCFF001RMV tongue (Tissue) 278.00 0.61 0.54 100.00
ENCFF001RTT urinary bladder (Tissue) 58.00 0.56 0.16 100.00
ENCFF001RTU liver (Tissue) 616.00 1.57 1.84 100.00
ENCFF004BLT GM23338 (Cell line) 5648.00 10.37 6.78 100.00
ENCFF004YAN Karpas-422 (Cell line) 3453.00 6.71 24.06 100.00
ENCFF015UJX spleen (Tissue) 954.00 12.58 5.38 100.00
ENCFF023EVA A375 (Cell line) 758.00 8.48 5.22 100.00
ENCFF059WHB prostate gland (Tissue) 104.00 7.36 0.39 100.00
ENCFF062TYF GM23248 (Cell line) 87.00 9.41 3.72 100.00
ENCFF073SVL transverse colon (Tissue) 66.00 4.25 0.32 100.00
ENCFF081QYT esophagus squamous epithelium (Tissue) 109.00 4.20 0.20 100.00
ENCFF158HXL right lobe of liver (Tissue) 139.00 4.28 1.19 100.00
ENCFF181JNF gastroesophageal sphincter (Tissue) 1.00 0.35 0.00 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 2142.00 11.25 1.77 100.00
ENCFF195CBI testis (Tissue) 177.00 10.14 0.88 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 1095.00 8.12 0.82 100.00
ENCFF225QQQ mesenchymal stem cell (In vitro differentiated cells) 2.00 0.15 0.01 100.00
ENCFF226BCZ Karpas-422 (Cell line) 2468.00 6.30 16.29 100.00
ENCFF261XRS stomach (Tissue) 180.00 11.06 0.88 100.00
ENCFF274FTM prostate gland (Tissue) 168.00 9.74 0.66 100.00
ENCFF295DXJ smooth muscle cell (In vitro differentiated cells) 1072.00 9.74 1.26 100.00
ENCFF299ETH OCI-LY7 (Cell line) 227.00 2.66 2.35 100.00
ENCFF310THB vagina (Tissue) 45.00 10.56 0.19 100.00
ENCFF338AVU gastroesophageal sphincter (Tissue) 183.00 8.20 0.54 100.00
ENCFF379KTQ stomach (Tissue) 60.00 4.33 0.27 100.00
ENCFF381DXM transverse colon (Tissue) 111.00 4.24 0.43 100.00
ENCFF400GBK spleen (Tissue) 413.00 11.14 2.04 100.00
ENCFF429ILE esophagus squamous epithelium (Tissue) 237.00 5.36 1.18 100.00
ENCFF450POH GM23338 (Cell line) 856.00 2.44 6.62 100.00
ENCFF476IAU esophagus squamous epithelium (Tissue) 348.00 6.82 1.15 100.00
ENCFF476SLG A375 (Cell line) 784.00 8.43 6.40 100.00
ENCFF478BJL testis (Tissue) 503.00 13.26 3.15 100.00
ENCFF495VAK Peyer's patch (Tissue) 78.00 6.75 0.16 100.00
ENCFF516CUT adrenal gland (Tissue) 36.00 3.04 0.20 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 139.00 4.43 0.12 100.00
ENCFF521RDG OCI-LY7 (Cell line) 224.00 2.83 2.27 100.00
ENCFF534JKI spleen (Tissue) 150.00 8.91 0.62 100.00
ENCFF540WGH HT-29 (Cell line) 99.00 7.08 1.19 100.00
ENCFF551ARD thyroid gland (Tissue) 125.00 13.02 0.84 100.00
ENCFF574WUG right lobe of liver (Tissue) 58.00 2.76 0.48 100.00
ENCFF583SZV stomach (Tissue) 3.00 0.71 0.01 100.00
ENCFF590YKZ GM23248 (Cell line) 96.00 10.49 1.88 100.00
ENCFF625OBY sigmoid colon (Tissue) 122.00 8.83 0.71 100.00
ENCFF643IED upper lobe of left lung (Tissue) 127.00 6.75 0.94 100.00
ENCFF645FQS transverse colon (Tissue) 84.00 4.79 0.44 100.00
ENCFF655CDV sigmoid colon (Tissue) 76.00 6.44 0.28 100.00
ENCFF657CXK esophagus muscularis mucosa (Tissue) 56.00 4.32 0.23 100.00
ENCFF682YQJ spleen (Tissue) 5.00 0.48 0.02 100.00
ENCFF685KEG stomach (Tissue) 384.00 9.17 2.20 100.00
ENCFF694VGD upper lobe of left lung (Tissue) 153.00 9.72 0.86 100.00
ENCFF728EUS sigmoid colon (Tissue) 148.00 8.37 0.95 100.00
ENCFF744HOK gastroesophageal sphincter (Tissue) 27.00 2.97 0.08 100.00
ENCFF768XBE upper lobe of left lung (Tissue) 141.00 7.34 1.02 100.00
ENCFF797VVQ esophagus muscularis mucosa (Tissue) 282.00 11.08 1.88 100.00
ENCFF800ZUT tibial nerve (Tissue) 94.00 10.32 0.78 100.00
ENCFF811DGS gastroesophageal sphincter (Tissue) 124.00 9.14 0.53 100.00
ENCFF834CUR HT-29 (Cell line) 272.00 13.10 3.59 100.00
ENCFF853XSN Peyer's patch (Tissue) 240.00 8.86 0.73 100.00
ENCFF903MJZ subcutaneous adipose tissue (Tissue) 11.00 0.80 0.03 100.00
ENCFF908XAD omental fat pad (Tissue) 74.00 4.04 0.17 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 130.00 4.45 0.15 100.00
ENCFF994BMY neural progenitor cell (In vitro differentiated cells) 2497.00 11.20 1.51 100.00

RNA secondary structure