ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 433.00 38.70 1.84 100.0 HCN2-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 4.00 14.81 0.02 100.0 SLC49A4-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 136.00 39.31 0.58 100.0 ATP5MC3-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 288.00 81.13 1.23 100.0 CDC25A-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 3248.00 81.94 13.83 100.0 RUNX3-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 247.00 26.82 1.05 100.0 BLOC1S4-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 761.00 28.80 3.24 100.0 ATAD5-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 364.00 52.07 1.55 100.0 SLITRK5-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 1267.00 60.13 5.40 100.0 HASPIN-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 179.00 97.81 0.76 100.0 ATG101-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 70.00 66.67 0.30 100.0 PRICKLE1-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 3343.00 95.46 14.24 98.58 MIR133A2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 5.00 20.00 0.02 100.0 PBLD-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 175438.00 80.52 747.06 97.61 MIRLET7BHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 29451.00 13.52 125.41 85.5 MIRLET7BHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 9.00 1.75 0.04 47.37 MIR375-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 502.00 97.86 2.14 99.41 MIR375-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 1326.00 42.19 5.65 100.0 MIR30E-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 1642.00 52.24 6.99 100.0 MIR30E-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 167.00 38.22 0.71 100.0 MIR29A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 106.00 89.83 0.45 100.0 MIR345-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 5772.00 99.14 24.58 100.0 MIR16-2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 12.00 6.86 0.05 100.0 MIR340-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 142.00 81.14 0.60 100.0 MIR340-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 307.00 59.27 1.31 100.0 MIR107-201 miRNA gastroesophageal sphincter (Tissue)