ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 44.00 11.46 0.16 100.0 HCN2-201 protein coding sigmoid colon (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 3.00 12.50 0.01 100.0 SLC49A4-201 protein coding sigmoid colon (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 45.00 11.00 0.16 100.0 ATP5MC3-201 protein coding sigmoid colon (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 144.00 89.44 0.52 100.0 CDC25A-201 protein coding sigmoid colon (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 1313.00 82.22 4.78 100.0 RUNX3-201 protein coding sigmoid colon (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 98.00 20.85 0.36 100.0 BLOC1S4-201 protein coding sigmoid colon (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 463.00 21.74 1.68 100.0 ATAD5-201 protein coding sigmoid colon (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 174.00 25.00 0.63 100.0 SLITRK5-201 protein coding sigmoid colon (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 252.00 33.03 0.92 100.0 HASPIN-201 protein coding sigmoid colon (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 552.00 99.46 2.01 100.0 ATG101-201 protein coding sigmoid colon (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 24.00 54.55 0.09 100.0 PRICKLE1-201 protein coding sigmoid colon (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 3929.00 96.56 14.29 98.92 MIR133A2-201 miRNA sigmoid colon (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 6.00 20.69 0.02 100.0 PBLD-204 protein coding sigmoid colon (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 208225.00 86.04 757.39 97.81 MIRLET7BHG-201 lncRNA sigmoid colon (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 20163.00 8.33 73.34 83.67 MIRLET7BHG-201 lncRNA sigmoid colon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 3.00 2.94 0.01 75.0 MIR375-201 miRNA sigmoid colon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 97.00 95.10 0.35 100.0 MIR375-201 miRNA sigmoid colon (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 5508.00 56.07 20.03 100.0 MIR30E-201 miRNA sigmoid colon (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 3837.00 39.06 13.96 100.0 MIR30E-201 miRNA sigmoid colon (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 232.00 42.88 0.84 100.0 MIR29A-201 miRNA sigmoid colon (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 33.00 91.67 0.12 100.0 MIR345-201 miRNA sigmoid colon (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 9022.00 99.09 32.82 100.0 MIR16-2-201 miRNA sigmoid colon (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 8.00 0.95 0.03 100.0 MIR340-201 miRNA sigmoid colon (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 786.00 93.35 2.86 100.0 MIR340-201 miRNA sigmoid colon (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 625.00 51.02 2.27 100.0 MIR107-201 miRNA sigmoid colon (Tissue)