ENCFF768XBE

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR539RDF
Description: Part of ENCODE experiment ENCSR539RDF. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 191.00 11.21 1.38 100.0 HCN2-201 protein coding upper lobe of left lung (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 1.00 2.86 0.01 100.0 SLC49A4-201 protein coding upper lobe of left lung (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 21.00 5.43 0.15 100.0 ATP5MC3-201 protein coding upper lobe of left lung (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 211.00 75.90 1.52 100.0 CDC25A-201 protein coding upper lobe of left lung (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 8932.00 80.22 64.41 100.0 RUNX3-201 protein coding upper lobe of left lung (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 294.00 11.89 2.12 100.0 BLOC1S4-201 protein coding upper lobe of left lung (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 100.00 11.98 0.72 100.0 ATAD5-201 protein coding upper lobe of left lung (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 64.00 3.72 0.46 100.0 SLITRK5-201 protein coding upper lobe of left lung (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 12.00 30.00 0.09 100.0 HASPIN-201 protein coding upper lobe of left lung (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 388.00 97.00 2.80 100.0 ATG101-201 protein coding upper lobe of left lung (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 43.00 29.86 0.31 100.0 PRICKLE1-201 protein coding upper lobe of left lung (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 134.00 99.26 0.97 100.0 MIR133A2-201 miRNA upper lobe of left lung (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 1.00 4.76 0.01 100.0 PBLD-204 protein coding upper lobe of left lung (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 368449.00 85.97 2656.85 97.23 MIRLET7BHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 32428.00 7.57 233.84 79.62 MIRLET7BHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 1142.00 2.39 8.23 63.23 MIR375-201 miRNA upper lobe of left lung (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 46233.00 96.68 333.38 99.15 MIR375-201 miRNA upper lobe of left lung (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 3670.00 49.39 26.46 100.0 MIR30E-201 miRNA upper lobe of left lung (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 3285.00 44.21 23.69 100.0 MIR30E-201 miRNA upper lobe of left lung (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 579.00 47.81 4.18 100.0 MIR29A-201 miRNA upper lobe of left lung (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 263.00 91.64 1.90 100.0 MIR345-201 miRNA upper lobe of left lung (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 11388.00 98.82 82.12 100.0 MIR16-2-201 miRNA upper lobe of left lung (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 8.00 0.66 0.06 100.0 MIR340-201 miRNA upper lobe of left lung (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1160.00 95.95 8.36 100.0 MIR340-201 miRNA upper lobe of left lung (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 1288.00 45.51 9.29 100.0 MIR107-201 miRNA upper lobe of left lung (Tissue)