ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 1958.00 66.28 7.44 100.0 HCN2-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 3.00 15.79 0.01 100.0 SLC49A4-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 644.00 38.29 2.45 100.0 ATP5MC3-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 2559.00 82.31 9.73 100.0 CDC25A-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 28744.00 96.74 109.29 100.0 RUNX3-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 100.00 10.57 0.38 100.0 BLOC1S4-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 3474.00 46.18 13.21 100.0 ATAD5-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 871.00 76.34 3.31 100.0 SLITRK5-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 2499.00 62.16 9.50 100.0 HASPIN-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 65.00 98.48 0.25 100.0 ATG101-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 29.00 58.00 0.11 100.0 PRICKLE1-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 1152.00 95.36 4.38 98.13 MIR133A2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 67.00 35.45 0.25 100.0 PBLD-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 101318.00 87.30 385.24 96.99 MIRLET7BHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 7847.00 6.76 29.84 85.6 MIRLET7BHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 3.00 5.77 0.01 100.0 MIR375-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 49.00 94.23 0.19 100.0 MIR375-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 1145.00 36.84 4.35 100.0 MIR30E-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 1777.00 57.18 6.76 100.0 MIR30E-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 227.00 46.23 0.86 100.0 MIR29A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 38.00 92.68 0.14 100.0 MIR345-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 3046.00 99.09 11.58 100.0 MIR16-2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 3.00 0.76 0.01 100.0 MIR340-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 382.00 96.95 1.45 100.0 MIR340-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 98.00 56.65 0.37 100.0 MIR107-201 miRNA gastroesophageal sphincter (Tissue)