ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 8.00 80.00 0.07 100.0 SLC49A4-201 protein coding A375 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 296.00 65.34 2.42 100.0 ATP5MC3-201 protein coding A375 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 248.00 95.75 2.02 100.0 CDC25A-201 protein coding A375 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 3.00 60.00 0.02 100.0 BLOC1S4-201 protein coding A375 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 15.00 18.52 0.12 100.0 ATAD5-201 protein coding A375 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 11.00 11.46 0.09 100.0 SLITRK5-201 protein coding A375 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 4.00 80.00 0.03 100.0 HASPIN-201 protein coding A375 (Cell line)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 1.00 4.55 0.01 100.0 PRR14L-201 protein coding A375 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 1662.00 98.64 13.57 100.0 ATG101-201 protein coding A375 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 12.00 44.44 0.10 100.0 PRICKLE1-201 protein coding A375 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 81.00 44.75 0.66 100.0 PBLD-204 protein coding A375 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 279.00 3.68 2.28 96.54 MIRLET7BHG-201 lncRNA A375 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 7031.00 92.70 57.39 99.7 MIRLET7BHG-201 lncRNA A375 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 1.00 100.00 0.01 100.0 MIR375-201 miRNA A375 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 255.00 38.99 2.08 100.0 MIR30E-201 miRNA A375 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 372.00 56.88 3.04 100.0 MIR30E-201 miRNA A375 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 45.00 64.29 0.37 100.0 MIR29A-201 miRNA A375 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 6.00 85.71 0.05 100.0 MIR345-201 miRNA A375 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 2252.00 98.25 18.38 100.0 MIR16-2-201 miRNA A375 (Cell line)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 2.00 4.17 0.02 100.0 MIR340-201 miRNA A375 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 45.00 93.75 0.37 100.0 MIR340-201 miRNA A375 (Cell line)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 137.00 72.49 1.12 100.0 MIR107-201 miRNA A375 (Cell line)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 2.00 100.00 0.02 100.0 MIR381-201 miRNA A375 (Cell line)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 1337.00 88.90 10.91 94.35 MIR103A2-201 miRNA A375 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_38_+ 14–38 86.00 57.33 0.70 100.0 MIR425-201 miRNA A375 (Cell line)