ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 2224.00 70.22 6.82 100.0 HCN2-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 4.00 6.25 0.01 100.0 SLC49A4-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 120.00 31.66 0.37 100.0 ATP5MC3-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 267.00 89.60 0.82 100.0 CDC25A-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 2617.00 88.92 8.02 100.0 RUNX3-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 90.00 16.48 0.28 100.0 BLOC1S4-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 4497.00 59.29 13.78 100.0 ATAD5-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 443.00 68.15 1.36 100.0 SLITRK5-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 2902.00 57.68 8.89 100.0 HASPIN-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 71.00 94.67 0.22 100.0 ATG101-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 6.00 25.00 0.02 100.0 PRICKLE1-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 2102.00 96.60 6.44 99.67 MIR133A2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 33.00 32.67 0.10 100.0 PBLD-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 181620.00 83.04 556.65 97.43 MIRLET7BHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 23642.00 10.81 72.46 86.27 MIRLET7BHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 3.00 7.14 0.01 75.0 MIR375-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 39.00 92.86 0.12 100.0 MIR375-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 1573.00 38.52 4.82 100.0 MIR30E-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 2175.00 53.26 6.67 100.0 MIR30E-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 153.00 34.54 0.47 100.0 MIR29A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 89.00 84.76 0.27 100.0 MIR345-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 7533.00 98.91 23.09 100.0 MIR16-2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 9.00 3.73 0.03 100.0 MIR340-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 219.00 90.87 0.67 100.0 MIR340-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 398.00 61.33 1.22 100.0 MIR107-201 miRNA gastroesophageal sphincter (Tissue)