ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 2407.00 58.44 7.17 100.0 HCN2-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 10.00 14.71 0.03 100.0 SLC49A4-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 301.00 49.26 0.90 100.0 ATP5MC3-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 367.00 82.66 1.09 100.0 CDC25A-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 7279.00 89.57 21.67 100.0 RUNX3-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 96.00 3.42 0.29 100.0 BLOC1S4-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 2737.00 45.54 8.15 100.0 ATAD5-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 439.00 60.55 1.31 100.0 SLITRK5-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 2605.00 46.63 7.76 100.0 HASPIN-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 201.00 94.81 0.60 100.0 ATG101-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 9.00 36.00 0.03 100.0 PRICKLE1-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 1555.00 97.68 4.63 99.49 MIR133A2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 10.00 30.30 0.03 100.0 PBLD-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 222276.00 83.67 661.84 97.45 MIRLET7BHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 26936.00 10.14 80.20 83.19 MIRLET7BHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 2.00 3.23 0.01 66.67 MIR375-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 60.00 96.77 0.18 100.0 MIR375-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 1481.00 40.09 4.41 100.0 MIR30E-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 1962.00 53.11 5.84 100.0 MIR30E-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 144.00 29.63 0.43 100.0 MIR29A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 95.00 93.14 0.28 100.0 MIR345-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 5634.00 99.14 16.78 100.0 MIR16-2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 16.00 4.72 0.05 100.0 MIR340-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 303.00 89.38 0.90 100.0 MIR340-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 418.00 60.49 1.24 100.0 MIR107-201 miRNA gastroesophageal sphincter (Tissue)