ENCFF001RMB

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle tissue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFZ
Description: Part of ENCODE experiment ENCSR000AFZ. The libraries contained in this experiment come from human fetal skeletal muscle tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 1.00 2.27 0.00 100.0 HCN2-201 protein coding skeletal muscle tissue (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 304.00 83.06 0.98 100.0 SLC49A4-201 protein coding skeletal muscle tissue (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 276.00 6.96 0.89 100.0 ATP5MC3-201 protein coding skeletal muscle tissue (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 1174.00 94.37 3.79 100.0 CDC25A-201 protein coding skeletal muscle tissue (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 7.00 10.77 0.02 100.0 RUNX3-201 protein coding skeletal muscle tissue (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 96.00 63.58 0.31 100.0 BLOC1S4-201 protein coding skeletal muscle tissue (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 207.00 5.04 0.67 100.0 ATAD5-201 protein coding skeletal muscle tissue (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 1435.00 53.58 4.63 100.0 SLITRK5-201 protein coding skeletal muscle tissue (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 214.00 47.66 0.69 100.0 HASPIN-201 protein coding skeletal muscle tissue (Tissue)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 365.00 45.45 1.18 100.0 PRR14L-201 protein coding skeletal muscle tissue (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 4947.00 94.03 15.97 100.0 ATG101-201 protein coding skeletal muscle tissue (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 3799.00 82.95 12.26 100.0 PRICKLE1-201 protein coding skeletal muscle tissue (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 789711.00 93.29 2548.85 95.29 MIR133A2-201 miRNA skeletal muscle tissue (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 9.00 9.78 0.03 100.0 PBLD-204 protein coding skeletal muscle tissue (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 528457.00 90.60 1705.63 99.21 MIRLET7BHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 35915.00 6.16 115.92 94.03 MIRLET7BHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 460.00 96.64 1.48 98.5 MIR375-201 miRNA skeletal muscle tissue (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 8.00 1.68 0.03 38.1 MIR375-201 miRNA skeletal muscle tissue (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 7846.00 18.64 25.32 100.0 MIR30E-201 miRNA skeletal muscle tissue (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 30912.00 73.45 99.77 100.0 MIR30E-201 miRNA skeletal muscle tissue (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 456.00 60.80 1.47 100.0 MIR29A-201 miRNA skeletal muscle tissue (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 2044.00 79.91 6.60 100.0 MIR345-201 miRNA skeletal muscle tissue (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 120925.00 98.31 390.29 100.0 MIR16-2-201 miRNA skeletal muscle tissue (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 235.00 2.95 0.76 100.0 MIR340-201 miRNA skeletal muscle tissue (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 7239.00 90.91 23.36 100.0 MIR340-201 miRNA skeletal muscle tissue (Tissue)