ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 1335.00 65.06 0.81 100.0 HCN2-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 1.00 50.00 0.00 100.0 SLC49A4-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 79.00 36.92 0.05 100.0 ATP5MC3-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 929.00 89.76 0.56 100.0 CDC25A-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 5.00 22.73 0.00 100.0 BLOC1S4-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 48.00 24.37 0.03 100.0 ATAD5-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 39.00 40.62 0.02 100.0 SLITRK5-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 259.00 63.33 0.16 100.0 HASPIN-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 1.00 0.72 0.00 100.0 PRR14L-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 283.00 96.26 0.17 100.0 ATG101-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 27.00 22.31 0.02 100.0 PRICKLE1-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 2.00 100.00 0.00 100.0 MIR133A2-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 433.00 42.20 0.26 100.0 PBLD-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 102.00 13.84 0.06 99.03 MIRLET7BHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 1.00 1.49 0.00 50.0 MIR375-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 66.00 98.51 0.04 98.51 MIR375-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 556.00 33.13 0.34 100.0 MIR30E-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 1037.00 61.80 0.63 100.0 MIR30E-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 41.00 85.42 0.02 100.0 MIR345-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 8772.00 98.94 5.32 100.0 MIR16-2-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 52.00 10.70 0.03 100.0 MIR340-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 395.00 81.28 0.24 100.0 MIR340-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 85.00 60.71 0.05 100.0 MIR107-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 4.00 100.00 0.00 100.0 MIR381-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 2939.00 94.02 1.78 99.16 MIR103A2-201 miRNA neural progenitor cell (In vitro differentiated cells)