ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 4.00 12.90 0.08 100.0 HCN2-201 protein coding GM23248 (Cell line)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 67.00 91.78 1.31 100.0 SLC49A4-201 protein coding GM23248 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 399.00 50.32 7.80 100.0 ATP5MC3-201 protein coding GM23248 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 140.00 95.24 2.74 100.0 CDC25A-201 protein coding GM23248 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 3.00 37.50 0.06 100.0 BLOC1S4-201 protein coding GM23248 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 20.00 13.51 0.39 100.0 ATAD5-201 protein coding GM23248 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 43.00 35.54 0.84 100.0 SLITRK5-201 protein coding GM23248 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 227.00 72.06 4.44 100.0 HASPIN-201 protein coding GM23248 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 617.00 98.72 12.06 100.0 ATG101-201 protein coding GM23248 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 12.00 75.00 0.23 100.0 PRICKLE1-201 protein coding GM23248 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 94.00 40.52 1.84 100.0 PBLD-204 protein coding GM23248 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 1153.00 6.93 22.53 96.81 MIRLET7BHG-201 lncRNA GM23248 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 14684.00 88.23 286.98 99.71 MIRLET7BHG-201 lncRNA GM23248 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 1.00 100.00 0.02 100.0 MIR375-201 miRNA GM23248 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 138.00 24.04 2.70 100.0 MIR30E-201 miRNA GM23248 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 421.00 73.34 8.23 100.0 MIR30E-201 miRNA GM23248 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 162.00 57.24 3.17 100.0 MIR29A-201 miRNA GM23248 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 14.00 100.00 0.27 100.0 MIR345-201 miRNA GM23248 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 1043.00 98.77 20.38 100.0 MIR16-2-201 miRNA GM23248 (Cell line)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 4.00 13.79 0.08 100.0 MIR340-201 miRNA GM23248 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 24.00 82.76 0.47 100.0 MIR340-201 miRNA GM23248 (Cell line)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 71.00 83.53 1.39 100.0 MIR107-201 miRNA GM23248 (Cell line)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 296.00 95.48 5.78 97.69 MIR381-201 miRNA GM23248 (Cell line)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 596.00 88.56 11.65 93.27 MIR103A2-201 miRNA GM23248 (Cell line)
ENST00000362155.4 ENST00000362155.4_44_64_+ 44–64 10.00 27.03 0.20 100.0 MIR369-201 miRNA GM23248 (Cell line)