ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 1.00 3.57 0.00 100.0 HCN2-201 protein coding occipital lobe (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 13952.00 97.16 45.22 100.0 SLC49A4-201 protein coding occipital lobe (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 1688.00 24.35 5.47 100.0 ATP5MC3-201 protein coding occipital lobe (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 12.00 60.00 0.04 100.0 CDC25A-201 protein coding occipital lobe (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 20.00 86.96 0.06 100.0 BLOC1S4-201 protein coding occipital lobe (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 154.00 11.79 0.50 100.0 ATAD5-201 protein coding occipital lobe (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 85.00 27.96 0.28 100.0 SLITRK5-201 protein coding occipital lobe (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 8.00 34.78 0.03 100.0 HASPIN-201 protein coding occipital lobe (Tissue)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 91.00 70.54 0.29 100.0 PRR14L-201 protein coding occipital lobe (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 862.00 94.00 2.79 100.0 ATG101-201 protein coding occipital lobe (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 126.00 57.53 0.41 100.0 PRICKLE1-201 protein coding occipital lobe (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 34.00 94.44 0.11 100.0 MIR133A2-201 miRNA occipital lobe (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 381431.00 92.86 1236.13 99.15 MIRLET7BHG-201 lncRNA occipital lobe (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 12919.00 3.15 41.87 88.42 MIRLET7BHG-201 lncRNA occipital lobe (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 2.00 0.53 0.01 50.0 MIR375-201 miRNA occipital lobe (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 367.00 97.61 1.19 98.13 MIR375-201 miRNA occipital lobe (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 6391.00 75.33 20.71 100.0 MIR30E-201 miRNA occipital lobe (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 1404.00 16.55 4.55 100.0 MIR30E-201 miRNA occipital lobe (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 487.00 34.08 1.58 100.0 MIR29A-201 miRNA occipital lobe (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 1060.00 89.00 3.44 100.0 MIR345-201 miRNA occipital lobe (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 132934.00 99.20 430.81 100.0 MIR16-2-201 miRNA occipital lobe (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 39979.00 91.52 129.56 100.0 MIR340-201 miRNA occipital lobe (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 1686.00 3.86 5.46 100.0 MIR340-201 miRNA occipital lobe (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 5386.00 85.36 17.45 100.0 MIR107-201 miRNA occipital lobe (Tissue)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 669.00 90.65 2.17 93.44 MIR381-201 miRNA occipital lobe (Tissue)