ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 318.00 32.09 1.67 100.0 HCN2-201 protein coding transverse colon (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 3.00 9.68 0.02 100.0 SLC49A4-201 protein coding transverse colon (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 79.00 14.77 0.42 100.0 ATP5MC3-201 protein coding transverse colon (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 74.00 45.68 0.39 100.0 CDC25A-201 protein coding transverse colon (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 1358.00 70.91 7.15 100.0 RUNX3-201 protein coding transverse colon (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 1967.00 66.12 10.35 100.0 BLOC1S4-201 protein coding transverse colon (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 561.00 17.35 2.95 100.0 ATAD5-201 protein coding transverse colon (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 33.00 2.55 0.17 100.0 SLITRK5-201 protein coding transverse colon (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 41.00 58.57 0.22 100.0 HASPIN-201 protein coding transverse colon (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 726.00 98.37 3.82 100.0 ATG101-201 protein coding transverse colon (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 141.00 75.81 0.74 100.0 PRICKLE1-201 protein coding transverse colon (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 1951.00 95.03 10.27 97.7 MIR133A2-201 miRNA transverse colon (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 4.00 18.18 0.02 100.0 PBLD-204 protein coding transverse colon (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 111028.00 73.40 584.42 97.69 MIRLET7BHG-201 lncRNA transverse colon (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 29709.00 19.64 156.38 86.11 MIRLET7BHG-201 lncRNA transverse colon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 1059.00 1.43 5.57 32.49 MIR375-201 miRNA transverse colon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 72145.00 97.40 379.75 98.9 MIR375-201 miRNA transverse colon (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 4629.00 47.43 24.37 100.0 MIR30E-201 miRNA transverse colon (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 4625.00 47.39 24.34 100.0 MIR30E-201 miRNA transverse colon (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 220.00 44.81 1.16 100.0 MIR29A-201 miRNA transverse colon (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 158.00 80.61 0.83 100.0 MIR345-201 miRNA transverse colon (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 5771.00 98.57 30.38 100.0 MIR16-2-201 miRNA transverse colon (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 7.00 0.50 0.04 100.0 MIR340-201 miRNA transverse colon (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1352.00 97.48 7.12 100.0 MIR340-201 miRNA transverse colon (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 1136.00 59.79 5.98 100.0 MIR107-201 miRNA transverse colon (Tissue)