ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 431.00 51.80 0.32 100.0 HCN2-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 2.00 1.54 0.00 100.0 SLC49A4-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 84.00 4.72 0.06 100.0 ATP5MC3-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 712.00 85.17 0.53 100.0 CDC25A-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 3.00 1.48 0.00 100.0 RUNX3-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 275.00 60.71 0.20 100.0 BLOC1S4-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 3030.00 64.59 2.26 100.0 ATAD5-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 94.00 31.76 0.07 100.0 SLITRK5-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 746.00 63.65 0.56 100.0 HASPIN-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 1.00 0.12 0.00 100.0 PRR14L-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 436.00 67.91 0.32 100.0 ATG101-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 48.00 5.85 0.04 100.0 PRICKLE1-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 360.00 96.26 0.27 100.0 MIR133A2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 690.00 41.62 0.51 100.0 PBLD-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 9120.00 88.10 6.80 99.7 MIRLET7BHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 56.00 0.54 0.04 100.0 MIRLET7BHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 426.00 95.30 0.32 99.07 MIR375-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 11.00 2.46 0.01 84.62 MIR375-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 1391.00 17.99 1.04 100.0 MIR30E-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 5962.00 77.12 4.44 100.0 MIR30E-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 392.00 63.12 0.29 100.0 MIR29A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 441.00 82.89 0.33 100.0 MIR345-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 4765.00 97.72 3.55 100.0 MIR16-2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 35.00 2.62 0.03 100.0 MIR340-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1266.00 94.83 0.94 100.0 MIR340-201 miRNA smooth muscle cell (In vitro differentiated cells)