ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 167.00 57.00 0.20 100.0 HCN2-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 3.00 3.49 0.00 100.0 SLC49A4-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 58.00 4.79 0.07 100.0 ATP5MC3-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 149.00 74.13 0.17 100.0 CDC25A-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 149.00 68.04 0.17 100.0 BLOC1S4-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 1852.00 62.44 2.17 100.0 ATAD5-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 24.00 10.62 0.03 100.0 SLITRK5-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 185.00 63.14 0.22 100.0 HASPIN-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 147.00 61.00 0.17 100.0 ATG101-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 7.00 1.35 0.01 100.0 PRICKLE1-201 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 290.00 95.39 0.34 98.98 MIR133A2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 202.00 47.31 0.24 100.0 PBLD-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 3599.00 91.93 4.23 99.81 MIRLET7BHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 21.00 0.54 0.02 100.0 MIRLET7BHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 7.00 3.29 0.01 87.5 MIR375-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 203.00 95.31 0.24 98.54 MIR375-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 735.00 12.66 0.86 100.0 MIR30E-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 4809.00 82.84 5.65 100.0 MIR30E-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 292.00 61.34 0.34 100.0 MIR29A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 408.00 86.44 0.48 100.0 MIR345-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 2505.00 97.58 2.94 100.0 MIR16-2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 901.00 92.41 1.06 100.0 MIR340-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 37.00 3.79 0.04 100.0 MIR340-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 470.00 71.98 0.55 100.0 MIR107-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 175.00 96.69 0.21 98.87 MIR381-201 miRNA smooth muscle cell (In vitro differentiated cells)