sncRNA detail

ENST00000554988.2_275_368_+

Derived from ENST00000554988.2 • Homo Sapiens

80 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
ENST00000554988
Gene
ENSG00000259001 (ENSG00000259001.4)
Precursor type
lncRNA
Sequence
ATAGGGCGGAGGGAAGCTCATCAGTGGGGCCACGAGCTGAGTGCGTCCTGTCACTCCACTCCCATGTCCCTTGGGAAGGTCTGAGACTAGGGCC
Start
Start: 275
End
End: 368
Length
Length: 94
Expression (sum)
111504.00
Expression fraction
11.44
Expression (Avg non-zero)
1393.80
Expression (max)
15778.00
Expression (CPM sum)
2.85
Expression (CPM avg non-zero)
3.42
Expression (CPM max)
11.76
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
ENST00000554988
Transcript ID
ENST00000554988.2
Chromosome
chr14
Genomic start
20342976
Genomic end
20343685

Gene context

Gene name
ENSG00000259001
Gene ID
ENSG00000259001.4
Gene type
lncRNA

Expression table

Showing 80 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF000JEH fibroblast of the aortic adventitia (Primary cell) 2.00 0.23 0.14 100.00
ENCFF000JLA mesenchymal stem cell of the bone marrow (Primary cell) 1.00 0.02 0.04 100.00
ENCFF000JLU placental pericyte (Primary cell) 2.00 0.01 0.24 100.00
ENCFF001REE GM12878 (Cell line) 83.00 0.63 0.21 100.00
ENCFF001REL K562 (Cell line) 2523.00 25.27 4.69 100.00
ENCFF001REQ K562 (Cell line) 652.00 9.81 1.65 100.00
ENCFF001RER GM12878 (Cell line) 704.00 5.18 1.45 100.00
ENCFF001RLS parietal lobe (Tissue) 701.00 10.72 2.48 100.00
ENCFF001RLT temporal lobe (Tissue) 1270.00 9.57 2.11 100.00
ENCFF001RLU spinal cord (Tissue) 1456.00 12.17 4.95 100.00
ENCFF001RLV tongue (Tissue) 597.00 5.54 1.62 100.00
ENCFF001RLW occipital lobe (Tissue) 1065.00 11.07 3.45 100.00
ENCFF001RLX spinal cord (Tissue) 1189.00 8.04 2.18 100.00
ENCFF001RLY diencephalon (Tissue) 694.00 9.43 1.98 100.00
ENCFF001RLZ heart (Tissue) 2568.00 20.56 2.43 100.00
ENCFF001RMA skin of body (Tissue) 1281.00 15.13 3.16 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 781.00 13.38 2.52 100.00
ENCFF001RMC temporal lobe (Tissue) 1048.00 6.48 2.14 100.00
ENCFF001RMD uterus (Tissue) 1691.00 16.57 2.80 100.00
ENCFF001RME occipital lobe (Tissue) 1568.00 12.15 3.32 100.00
ENCFF001RMF metanephros (Tissue) 1812.00 12.20 3.37 100.00
ENCFF001RMG parietal lobe (Tissue) 1177.00 12.77 5.00 100.00
ENCFF001RMH lung (Tissue) 853.00 9.22 1.93 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 313.00 11.77 1.36 100.00
ENCFF001RMJ skin of body (Tissue) 377.00 6.39 0.98 100.00
ENCFF001RMK heart (Tissue) 813.00 17.11 1.41 100.00
ENCFF001RML cerebellum (Tissue) 2192.00 13.08 4.05 100.00
ENCFF001RMM frontal cortex (Tissue) 2369.00 14.95 3.90 100.00
ENCFF001RMN uterus (Tissue) 2390.00 11.64 4.56 100.00
ENCFF001RMO cerebellum (Tissue) 1717.00 16.64 3.32 100.00
ENCFF001RMP frontal cortex (Tissue) 2090.00 12.71 3.34 100.00
ENCFF001RMQ lung (Tissue) 2507.00 11.37 3.77 100.00
ENCFF001RMR thyroid gland (Tissue) 1284.00 10.65 2.85 100.00
ENCFF001RMS diencephalon (Tissue) 1125.00 11.94 2.33 100.00
ENCFF001RMT thyroid gland (Tissue) 3024.00 15.18 3.99 100.00
ENCFF001RMU metanephros (Tissue) 491.00 9.74 1.03 100.00
ENCFF001RMV tongue (Tissue) 1243.00 13.27 2.42 100.00
ENCFF001RTT urinary bladder (Tissue) 1004.00 10.19 2.71 100.00
ENCFF001RTU liver (Tissue) 701.00 5.86 2.09 100.00
ENCFF004BLT GM23338 (Cell line) 355.00 14.76 0.43 100.00
ENCFF004YAN Karpas-422 (Cell line) 1419.00 9.43 9.89 100.00
ENCFF023EVA A375 (Cell line) 569.00 35.79 3.92 100.00
ENCFF059WHB prostate gland (Tissue) 740.00 17.42 2.76 100.00
ENCFF073SVL transverse colon (Tissue) 727.00 8.74 3.49 100.00
ENCFF076JME ovary (Tissue) 585.00 14.39 2.58 100.00
ENCFF081QYT esophagus squamous epithelium (Tissue) 1395.00 24.76 2.55 100.00
ENCFF106XDA esophagus muscularis mucosa (Tissue) 265.00 21.35 1.19 100.00
ENCFF181JNF gastroesophageal sphincter (Tissue) 48.00 2.99 0.18 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 1812.00 35.49 1.49 100.00
ENCFF211GIU transverse colon (Tissue) 160.00 0.95 0.78 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 15778.00 49.17 11.76 100.00
ENCFF225QQQ mesenchymal stem cell (In vitro differentiated cells) 14.00 0.61 0.06 100.00
ENCFF226BCZ Karpas-422 (Cell line) 2321.00 15.47 15.32 100.00
ENCFF242SEA body of pancreas (Tissue) 598.00 11.27 2.60 100.00
ENCFF274FTM prostate gland (Tissue) 422.00 7.84 1.66 100.00
ENCFF295DXJ smooth muscle cell (In vitro differentiated cells) 12043.00 47.68 14.14 100.00
ENCFF299ETH OCI-LY7 (Cell line) 543.00 13.91 5.63 100.00
ENCFF338AVU gastroesophageal sphincter (Tissue) 358.00 8.84 1.07 100.00
ENCFF381DXM transverse colon (Tissue) 153.00 0.97 0.59 100.00
ENCFF429ILE esophagus squamous epithelium (Tissue) 520.00 11.51 2.59 100.00
ENCFF450POH GM23338 (Cell line) 34.00 3.12 0.26 100.00
ENCFF476IAU esophagus squamous epithelium (Tissue) 635.00 12.19 2.09 100.00
ENCFF476SLG A375 (Cell line) 570.00 44.53 4.65 100.00
ENCFF510IHL esophagus squamous epithelium (Tissue) 331.00 9.83 1.31 100.00
ENCFF516CUT adrenal gland (Tissue) 859.00 13.60 4.72 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 6511.00 30.68 5.45 100.00
ENCFF521RDG OCI-LY7 (Cell line) 674.00 16.96 6.84 100.00
ENCFF540WGH HT-29 (Cell line) 380.00 41.48 4.56 100.00
ENCFF645FQS transverse colon (Tissue) 256.00 2.81 1.35 100.00
ENCFF657CXK esophagus muscularis mucosa (Tissue) 564.00 24.80 2.30 100.00
ENCFF686BEE adrenal gland (Tissue) 819.00 18.36 5.53 100.00
ENCFF720JFQ mesendoderm (In vitro differentiated cells) 9.00 0.64 0.08 100.00
ENCFF744HOK gastroesophageal sphincter (Tissue) 108.00 6.48 0.33 100.00
ENCFF797VVQ esophagus muscularis mucosa (Tissue) 136.00 12.20 0.91 100.00
ENCFF811DGS gastroesophageal sphincter (Tissue) 81.00 2.40 0.34 100.00
ENCFF834CUR HT-29 (Cell line) 333.00 28.61 4.39 100.00
ENCFF903MJZ subcutaneous adipose tissue (Tissue) 2234.00 13.80 6.52 100.00
ENCFF908XAD omental fat pad (Tissue) 1279.00 11.84 3.01 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 5249.00 30.07 5.86 100.00
ENCFF994BMY neural progenitor cell (In vitro differentiated cells) 2259.00 34.04 1.37 100.00

RNA secondary structure