ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 37.00 6.41 0.17 100.0 HCN2-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 1.00 33.33 0.00 100.0 SLC49A4-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 65.00 7.07 0.29 100.0 ATP5MC3-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 256.00 67.19 1.15 100.0 CDC25A-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 24267.00 96.29 108.60 100.0 RUNX3-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 154.00 21.88 0.69 100.0 BLOC1S4-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 113.00 17.91 0.51 100.0 ATAD5-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 87.00 12.81 0.39 100.0 SLITRK5-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 151.00 99.34 0.68 100.0 ATG101-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 1.00 9.09 0.00 100.0 PRICKLE1-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 2224.00 95.08 9.95 97.72 MIR133A2-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 3.00 42.86 0.01 100.0 PBLD-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 150587.00 91.71 673.88 97.65 MIRLET7BHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 5401.00 3.29 24.17 79.67 MIRLET7BHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 8.00 3.00 0.04 61.54 MIR375-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 254.00 95.13 1.14 97.69 MIR375-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 7240.00 62.79 32.40 100.0 MIR30E-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 3752.00 32.54 16.79 100.0 MIR30E-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 167.00 50.76 0.75 100.0 MIR29A-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 47.00 94.00 0.21 100.0 MIR345-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 4138.00 99.26 18.52 100.0 MIR16-2-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1278.00 96.38 5.72 100.0 MIR340-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 10.00 0.75 0.04 100.0 MIR340-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 577.00 66.32 2.58 100.0 MIR107-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 97.00 91.51 0.43 91.51 MIR381-201 miRNA esophagus muscularis mucosa (Tissue)