sncRNA detail

ENST00000658801.2_139_214_+

Derived from ENST00000658801.2 • Homo Sapiens

65 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
LIMD1-AS1-204
Gene
LIMD1-AS1 (ENSG00000230530.3)
Precursor type
lncRNA
Sequence
GGGCCAGTGGCGCAATGGATAACGCGTCTGACTACGGATCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCGCGA
Start
Start: 139
End
End: 214
Length
Length: 76
Expression (sum)
101620.00
Expression fraction
5.73
Expression (Avg non-zero)
1563.38
Expression (max)
14804.00
Expression (CPM sum)
2.58
Expression (CPM avg non-zero)
3.59
Expression (CPM max)
17.38
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
LIMD1-AS1-204
Transcript ID
ENST00000658801.2
Chromosome
chr3
Genomic start
45676369
Genomic end
45689209

Gene context

Gene name
LIMD1-AS1
Gene ID
ENSG00000230530.3
Gene type
lncRNA

Expression table

Showing 65 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REE GM12878 (Cell line) 5763.00 2.59 14.86 100.00
ENCFF001REL K562 (Cell line) 2439.00 4.74 4.53 100.00
ENCFF001REQ K562 (Cell line) 2454.00 2.00 6.23 100.00
ENCFF001RER GM12878 (Cell line) 3193.00 3.94 6.59 100.00
ENCFF001RLT temporal lobe (Tissue) 1.00 0.01 0.00 100.00
ENCFF001RLV tongue (Tissue) 2.00 0.01 0.01 100.00
ENCFF001RLW occipital lobe (Tissue) 2.00 0.18 0.01 100.00
ENCFF001RLX spinal cord (Tissue) 2.00 0.01 0.00 100.00
ENCFF001RLY diencephalon (Tissue) 3.00 0.03 0.01 100.00
ENCFF001RLZ heart (Tissue) 1.00 0.01 0.00 100.00
ENCFF001RMA skin of body (Tissue) 2.00 0.03 0.00 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 1.00 0.01 0.00 100.00
ENCFF001RMC temporal lobe (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RME occipital lobe (Tissue) 5.00 0.25 0.01 100.00
ENCFF001RMF metanephros (Tissue) 1.00 0.06 0.00 100.00
ENCFF001RMH lung (Tissue) 2.00 0.02 0.00 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 1.00 0.02 0.00 100.00
ENCFF001RMJ skin of body (Tissue) 4.00 0.04 0.01 100.00
ENCFF001RMK heart (Tissue) 3.00 0.02 0.01 100.00
ENCFF001RML cerebellum (Tissue) 6.00 0.06 0.01 100.00
ENCFF001RMM frontal cortex (Tissue) 7.00 0.14 0.01 100.00
ENCFF001RMN uterus (Tissue) 4.00 0.05 0.01 100.00
ENCFF001RMO cerebellum (Tissue) 5.00 0.03 0.01 100.00
ENCFF001RMP frontal cortex (Tissue) 2.00 0.05 0.00 100.00
ENCFF001RMQ lung (Tissue) 6.00 0.31 0.01 100.00
ENCFF001RMV tongue (Tissue) 16.00 0.17 0.03 100.00
ENCFF001RTT urinary bladder (Tissue) 8.00 0.20 0.02 100.00
ENCFF001RTU liver (Tissue) 49.00 0.32 0.15 100.00
ENCFF004BLT GM23338 (Cell line) 19.00 0.05 0.02 100.00
ENCFF004YAN Karpas-422 (Cell line) 33.00 0.28 0.23 100.00
ENCFF059WHB prostate gland (Tissue) 61.00 0.38 0.23 100.00
ENCFF062TYF GM23248 (Cell line) 2.00 0.09 0.09 100.00
ENCFF073SVL transverse colon (Tissue) 459.00 4.18 2.20 100.00
ENCFF076JME ovary (Tissue) 40.00 1.26 0.18 100.00
ENCFF081QYT esophagus squamous epithelium (Tissue) 1943.00 42.44 3.55 100.00
ENCFF106XDA esophagus muscularis mucosa (Tissue) 127.00 1.74 0.57 100.00
ENCFF181JNF gastroesophageal sphincter (Tissue) 172.00 0.91 0.65 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 5312.00 49.32 4.38 100.00
ENCFF211GIU transverse colon (Tissue) 145.00 0.89 0.71 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 9749.00 22.39 7.27 100.00
ENCFF226BCZ Karpas-422 (Cell line) 44.00 0.46 0.29 100.00
ENCFF242SEA body of pancreas (Tissue) 1133.00 7.31 4.92 100.00
ENCFF274FTM prostate gland (Tissue) 44.00 0.35 0.17 100.00
ENCFF295DXJ smooth muscle cell (In vitro differentiated cells) 14804.00 37.83 17.38 100.00
ENCFF299ETH OCI-LY7 (Cell line) 9.00 0.26 0.09 100.00
ENCFF338AVU gastroesophageal sphincter (Tissue) 1833.00 12.93 5.46 100.00
ENCFF381DXM transverse colon (Tissue) 511.00 1.07 1.98 100.00
ENCFF429ILE esophagus squamous epithelium (Tissue) 6965.00 37.61 34.63 100.00
ENCFF450POH GM23338 (Cell line) 152.00 0.20 1.18 100.00
ENCFF476IAU esophagus squamous epithelium (Tissue) 7095.00 52.83 23.39 100.00
ENCFF510IHL esophagus squamous epithelium (Tissue) 2001.00 13.53 7.91 100.00
ENCFF516CUT adrenal gland (Tissue) 4821.00 32.77 26.49 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 8215.00 51.93 6.88 100.00
ENCFF521RDG OCI-LY7 (Cell line) 1.00 0.04 0.01 100.00
ENCFF645FQS transverse colon (Tissue) 59.00 0.51 0.31 100.00
ENCFF657CXK esophagus muscularis mucosa (Tissue) 253.00 4.73 1.03 100.00
ENCFF686BEE adrenal gland (Tissue) 5027.00 23.69 33.93 100.00
ENCFF744HOK gastroesophageal sphincter (Tissue) 1880.00 17.68 5.76 100.00
ENCFF797VVQ esophagus muscularis mucosa (Tissue) 39.00 0.42 0.26 100.00
ENCFF811DGS gastroesophageal sphincter (Tissue) 50.00 0.80 0.21 100.00
ENCFF903MJZ subcutaneous adipose tissue (Tissue) 1758.00 7.68 5.13 100.00
ENCFF908XAD omental fat pad (Tissue) 2278.00 4.59 5.37 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 5536.00 48.74 6.18 100.00
ENCFF993BFO body of pancreas (Tissue) 69.00 0.13 0.67 100.00
ENCFF994BMY neural progenitor cell (In vitro differentiated cells) 4998.00 51.94 3.03 100.00

RNA secondary structure