sncRNA detail

tRNA-transcript-chr1-159141611_3_20_+

Derived from TRNA-TRANSCRIPT-CHR1-159141611 • Homo Sapiens

91 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
TRNA-TRANSCRIPT-CHR1-159141611
Gene
tRNA-gene-chr1-159141611 (TRNA-GENE-CHR1-159141611)
Precursor type
Arg tRNA
Sequence
CTCTGTGGCGCAATGGAC
Start
Start: 3
End
End: 20
Length
Length: 18
Expression (sum)
44610.00
Expression fraction
45.63
Expression (Avg non-zero)
490.22
Expression (max)
16497.00
Expression (CPM sum)
1.19
Expression (CPM avg non-zero)
1.42
Expression (CPM max)
33.77
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
TRNA-TRANSCRIPT-CHR1-159141611
Transcript ID
TRNA-TRANSCRIPT-CHR1-159141611
Chromosome
chr1
Genomic start
159141611
Genomic end
159141684

Gene context

Gene name
tRNA-gene-chr1-159141611
Gene ID
TRNA-GENE-CHR1-159141611
Gene type
Arg_tRNA

Expression table

Showing 91 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REE GM12878 (Cell line) 44.00 2.52 0.11 100.00
ENCFF001REL K562 (Cell line) 2.00 1.16 0.00 100.00
ENCFF001REQ K562 (Cell line) 15.00 3.39 0.04 100.00
ENCFF001RER GM12878 (Cell line) 36.00 3.88 0.07 100.00
ENCFF001RLS parietal lobe (Tissue) 3010.00 48.99 10.65 100.00
ENCFF001RLT temporal lobe (Tissue) 3880.00 46.96 6.44 100.00
ENCFF001RLU spinal cord (Tissue) 285.00 35.54 0.97 100.00
ENCFF001RLV tongue (Tissue) 47.00 23.50 0.13 100.00
ENCFF001RLW occipital lobe (Tissue) 284.00 32.91 0.92 100.00
ENCFF001RLX spinal cord (Tissue) 4988.00 54.58 9.15 100.00
ENCFF001RLY diencephalon (Tissue) 3836.00 50.88 10.94 100.00
ENCFF001RLZ heart (Tissue) 23.00 33.33 0.02 100.00
ENCFF001RMA skin of body (Tissue) 58.00 34.12 0.14 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 208.00 51.87 0.67 100.00
ENCFF001RMC temporal lobe (Tissue) 16497.00 56.09 33.77 100.00
ENCFF001RMD uterus (Tissue) 112.00 54.63 0.19 100.00
ENCFF001RME occipital lobe (Tissue) 1862.00 48.91 3.94 100.00
ENCFF001RMF metanephros (Tissue) 2.00 22.22 0.00 100.00
ENCFF001RMG parietal lobe (Tissue) 255.00 21.74 1.08 100.00
ENCFF001RMH lung (Tissue) 14.00 8.14 0.03 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 34.00 47.22 0.15 100.00
ENCFF001RMJ skin of body (Tissue) 874.00 64.60 2.27 100.00
ENCFF001RMK heart (Tissue) 34.00 35.05 0.06 100.00
ENCFF001RML cerebellum (Tissue) 2610.00 42.65 4.83 100.00
ENCFF001RMM frontal cortex (Tissue) 629.00 29.97 1.04 100.00
ENCFF001RMN uterus (Tissue) 26.00 26.26 0.05 100.00
ENCFF001RMO cerebellum (Tissue) 818.00 37.49 1.58 100.00
ENCFF001RMP frontal cortex (Tissue) 1697.00 45.13 2.71 100.00
ENCFF001RMR thyroid gland (Tissue) 11.00 11.70 0.02 100.00
ENCFF001RMS diencephalon (Tissue) 643.00 35.66 1.33 100.00
ENCFF001RMT thyroid gland (Tissue) 41.00 13.85 0.05 100.00
ENCFF001RMU metanephros (Tissue) 40.00 52.63 0.08 100.00
ENCFF001RMV tongue (Tissue) 14.00 13.33 0.03 100.00
ENCFF001RTT urinary bladder (Tissue) 153.00 59.77 0.41 100.00
ENCFF001RTU liver (Tissue) 13.00 16.88 0.04 100.00
ENCFF004BLT GM23338 (Cell line) 7.00 1.29 0.01 100.00
ENCFF023EVA A375 (Cell line) 4.00 19.05 0.03 100.00
ENCFF059WHB prostate gland (Tissue) 792.00 54.25 2.96 100.00
ENCFF062TYF GM23248 (Cell line) 4.00 13.79 0.17 100.00
ENCFF073SVL transverse colon (Tissue) 3.00 20.00 0.01 100.00
ENCFF076JME ovary (Tissue) 4.00 80.00 0.02 100.00
ENCFF081QYT esophagus squamous epithelium (Tissue) 1.00 7.14 0.00 100.00
ENCFF106XDA esophagus muscularis mucosa (Tissue) 37.00 56.06 0.17 100.00
ENCFF158HXL right lobe of liver (Tissue) 2.00 8.00 0.02 100.00
ENCFF181JNF gastroesophageal sphincter (Tissue) 6.00 28.57 0.02 100.00
ENCFF192PKY upper lobe of left lung (Tissue) 11.00 20.37 0.07 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 1.00 2.27 0.00 100.00
ENCFF195CBI testis (Tissue) 38.00 53.52 0.19 100.00
ENCFF211GIU transverse colon (Tissue) 7.00 11.67 0.03 100.00
ENCFF261XRS stomach (Tissue) 20.00 44.44 0.10 100.00
ENCFF274FTM prostate gland (Tissue) 29.00 46.03 0.11 100.00
ENCFF276PUU mesenchymal stem cell (In vitro differentiated cells) 1.00 0.38 0.00 100.00
ENCFF310THB vagina (Tissue) 69.00 65.71 0.29 100.00
ENCFF316MTC trophoblast cell (In vitro differentiated cells) 2.00 1.20 0.01 100.00
ENCFF379KTQ stomach (Tissue) 27.00 61.36 0.12 100.00
ENCFF381DXM transverse colon (Tissue) 4.00 11.76 0.02 100.00
ENCFF429ILE esophagus squamous epithelium (Tissue) 4.00 14.29 0.02 100.00
ENCFF450POH GM23338 (Cell line) 8.00 0.53 0.06 100.00
ENCFF476IAU esophagus squamous epithelium (Tissue) 1.00 6.25 0.00 100.00
ENCFF476SLG A375 (Cell line) 4.00 20.00 0.03 100.00
ENCFF478BJL testis (Tissue) 10.00 58.82 0.06 100.00
ENCFF495VAK Peyer's patch (Tissue) 3.00 27.27 0.01 100.00
ENCFF510IHL esophagus squamous epithelium (Tissue) 3.00 4.62 0.01 100.00
ENCFF516CUT adrenal gland (Tissue) 18.00 23.68 0.10 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 4.00 8.70 0.00 100.00
ENCFF534JKI spleen (Tissue) 2.00 10.53 0.01 100.00
ENCFF540WGH HT-29 (Cell line) 1.00 100.00 0.01 100.00
ENCFF546NNZ uterus (Tissue) 1.00 14.29 0.00 100.00
ENCFF551ARD thyroid gland (Tissue) 1.00 25.00 0.01 100.00
ENCFF574WUG right lobe of liver (Tissue) 3.00 11.54 0.03 100.00
ENCFF583SZV stomach (Tissue) 3.00 27.27 0.01 100.00
ENCFF590YKZ GM23248 (Cell line) 7.00 18.92 0.14 100.00
ENCFF625OBY sigmoid colon (Tissue) 3.00 10.34 0.02 100.00
ENCFF631JZF sigmoid colon (Tissue) 164.00 60.97 0.76 100.00
ENCFF643IED upper lobe of left lung (Tissue) 5.00 18.52 0.04 100.00
ENCFF645FQS transverse colon (Tissue) 39.00 49.37 0.21 100.00
ENCFF655CDV sigmoid colon (Tissue) 3.00 16.67 0.01 100.00
ENCFF682YQJ spleen (Tissue) 1.00 5.88 0.00 100.00
ENCFF685KEG stomach (Tissue) 3.00 7.32 0.02 100.00
ENCFF686BEE adrenal gland (Tissue) 23.00 37.10 0.16 100.00
ENCFF694VGD upper lobe of left lung (Tissue) 59.00 61.46 0.33 100.00
ENCFF714LDG trophoblast cell (In vitro differentiated cells) 1.00 0.42 0.01 100.00
ENCFF728EUS sigmoid colon (Tissue) 13.00 16.05 0.08 100.00
ENCFF744HOK gastroesophageal sphincter (Tissue) 2.00 9.09 0.01 100.00
ENCFF797VVQ esophagus muscularis mucosa (Tissue) 3.00 50.00 0.02 100.00
ENCFF800ZUT tibial nerve (Tissue) 4.00 18.18 0.03 100.00
ENCFF853XSN Peyer's patch (Tissue) 13.00 39.39 0.04 100.00
ENCFF903MJZ subcutaneous adipose tissue (Tissue) 2.00 14.29 0.01 100.00
ENCFF908XAD omental fat pad (Tissue) 8.00 33.33 0.02 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 1.00 10.00 0.00 100.00
ENCFF993BFO body of pancreas (Tissue) 26.00 30.95 0.25 100.00

RNA secondary structure