sncRNA detail

ENST00000650796.1_1641_1722_+

Derived from ENST00000650796.1 • Homo Sapiens

67 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
GAS5-230
Gene
GAS5 (ENSG00000234741.11)
Precursor type
retained intron
Sequence
AGCTACTGTTAGTGATGATTTTAAAATTAAAGCAGATGGGAATCTCTCTGAGAAAGAAAATGGAGATTAATCTTAAACTGAA
Start
Start: 1641
End
End: 1722
Length
Length: 82
Expression (sum)
5658879.00
Expression fraction
4.31
Expression (Avg non-zero)
84460.88
Expression (max)
650994.00
Expression (CPM sum)
142.98
Expression (CPM avg non-zero)
354.30
Expression (CPM max)
11051.81
Prominence
72.58

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
GAS5-230
Transcript ID
ENST00000650796.1
Chromosome
chr1
Genomic start
173863931
Genomic end
173867991

Gene context

Gene name
GAS5
Gene ID
ENSG00000234741.11
Gene type
lncRNA

Expression table

Showing 67 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF000IZM hematopoietic multipotent progenitor cell (In vitro differentiated cells) 91486.00 44.33 9373.28 81.50
ENCFF000JEC neural cell (In vitro differentiated cells) 14277.00 22.05 1194.48 81.04
ENCFF000JEF neural cell (In vitro differentiated cells) 10624.00 24.33 655.94 80.34
ENCFF000JEH fibroblast of the aortic adventitia (Primary cell) 40150.00 8.31 2757.40 86.22
ENCFF000JEI fibroblast of the aortic adventitia (Primary cell) 79981.00 13.14 4226.97 82.23
ENCFF000JEU thoracic aorta endothelial cell (Primary cell) 135420.00 39.13 10376.26 73.12
ENCFF000JFM thoracic aorta endothelial cell (Primary cell) 105704.00 38.50 9502.99 71.85
ENCFF000JFN articular chondrocyte of knee joint (Primary cell) 41617.00 13.83 3569.69 74.79
ENCFF000JGN articular chondrocyte of knee joint (Primary cell) 34641.00 12.50 3260.31 74.15
ENCFF000JIX hair follicle dermal papilla cell (Primary cell) 29223.00 13.24 3097.26 75.31
ENCFF000JJB hair follicle dermal papilla cell (Primary cell) 86459.00 15.81 4593.44 76.24
ENCFF000JJI mesenchymal stem cell of adipose (Primary cell) 97069.00 14.53 3982.02 70.86
ENCFF000JJT mammary epithelial cell (Primary cell) 17697.00 24.90 5895.12 84.78
ENCFF000JJV mesenchymal stem cell of adipose (Primary cell) 114283.00 13.08 3745.16 75.76
ENCFF000JKK mesenchymal stem cell of Wharton's jelly (Primary cell) 131282.00 29.81 7873.58 74.32
ENCFF000JKT mesenchymal stem cell of Wharton's jelly (Primary cell) 169067.00 31.82 8584.66 77.80
ENCFF000JKU osteoblast (Primary cell) 7566.00 7.35 2444.60 85.23
ENCFF000KEF melanocyte of skin (Primary cell) 104658.00 29.64 6458.61 68.85
ENCFF000JLA mesenchymal stem cell of the bone marrow (Primary cell) 289949.00 47.49 10328.23 76.31
ENCFF000JLG osteoblast (Primary cell) 61740.00 22.53 5918.85 75.77
ENCFF000JLH mesenchymal stem cell of the bone marrow (Primary cell) 258733.00 30.66 5822.97 79.38
ENCFF000JLU placental pericyte (Primary cell) 48639.00 28.71 5956.67 69.51
ENCFF000JLV placental pericyte (Primary cell) 444475.00 33.18 9389.56 73.67
ENCFF000JMQ placental epithelial cell (Primary cell) 98422.00 15.04 4261.63 80.59
ENCFF000JMV placental epithelial cell (Primary cell) 394054.00 31.39 8685.07 75.08
ENCFF000JNF vein endothelial cell (Primary cell) 391019.00 37.94 11478.48 70.00
ENCFF000JNK vein endothelial cell (Primary cell) 336393.00 34.74 9549.01 70.39
ENCFF000JNS fibroblast of villous mesenchyme (Primary cell) 58550.00 36.83 11552.19 74.85
ENCFF000JOD fibroblast of villous mesenchyme (Primary cell) 65507.00 33.16 10121.31 74.01
ENCFF000JOQ subcutaneous preadipocyte (Primary cell) 459047.00 38.24 11961.81 62.79
ENCFF000JOR subcutaneous preadipocyte (Primary cell) 650994.00 33.51 11051.81 70.73
ENCFF000JQC IMR-90 (Cell line) 1203.00 48.53 2063.02 84.84
ENCFF000JQE IMR-90 (Cell line) 1033.00 43.31 1106.82 84.33
ENCFF000KCE fibroblast of dermis (Primary cell) 118736.00 27.67 8260.53 74.55
ENCFF000KCV fibroblast of dermis (Primary cell) 38857.00 19.24 4962.02 78.67
ENCFF000KEC melanocyte of skin (Primary cell) 95668.00 28.65 8466.66 69.30
ENCFF000KEJ melanocyte of skin (Primary cell) 97689.00 34.60 8526.50 74.54
ENCFF000KFC melanocyte of skin (Primary cell) 190035.00 38.42 9323.37 72.28
ENCFF000KFJ skeletal muscle satellite cell (Primary cell) 148938.00 29.69 9702.79 68.64
ENCFF000KFO skeletal muscle satellite cell (Primary cell) 94767.00 33.38 10195.03 71.64
ENCFF000KHC SK-N-SH (Cell line) 1748.00 38.42 586.62 79.13
ENCFF000KIC SK-N-SH (Cell line) 1434.00 35.19 382.13 79.23
ENCFF001REQ K562 (Cell line) 1.00 0.00 0.00 100.00
ENCFF001RLU spinal cord (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RLX spinal cord (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RLZ heart (Tissue) 2.00 0.00 0.00 100.00
ENCFF001RMA skin of body (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 2.00 0.00 0.01 100.00
ENCFF001RMC temporal lobe (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RMD uterus (Tissue) 4.00 0.00 0.01 80.00
ENCFF001RMG parietal lobe (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RMH lung (Tissue) 2.00 0.00 0.00 100.00
ENCFF001RMJ skin of body (Tissue) 3.00 0.00 0.01 100.00
ENCFF001RMK heart (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RML cerebellum (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RMN uterus (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RMP frontal cortex (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RMR thyroid gland (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RMV tongue (Tissue) 3.00 0.00 0.01 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 1.00 0.00 0.00 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 4.00 0.00 0.00 100.00
ENCFF299ETH OCI-LY7 (Cell line) 1.00 0.00 0.01 100.00
ENCFF476SLG A375 (Cell line) 1.00 0.00 0.01 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 3.00 0.00 0.00 100.00
ENCFF744HOK gastroesophageal sphincter (Tissue) 3.00 0.00 0.01 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 2.00 0.00 0.00 100.00
ENCFF994BMY neural progenitor cell (In vitro differentiated cells) 3.00 0.00 0.00 100.00

RNA secondary structure