ENCFF000KFO

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle satellite cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUZ
Description: Part of ENCODE experiment ENCSR000CUZ. The libraries contained in this experiment come from skeletal muscle myosatellite cells isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 4.00 7.14 0.43 80.0 RNU5A-1-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 6.80 12.13 0.73 56.63 RNU5A-1-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 1.65 2.95 0.18 16.53 RNU5A-1-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 2.00 0.91 0.22 100.0 7SK.1-201 misc RNA skeletal muscle satellite cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 57.00 25.91 6.13 100.0 7SK.1-201 misc RNA skeletal muscle satellite cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 1.00 0.25 0.11 100.0 SNORD83A-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 1.00 0.25 0.11 50.0 SNORD83A-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1616.00 61.33 173.85 100.0 SNORD12B-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 421.00 15.98 45.29 100.0 SNORD12B-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 2033.00 89.09 218.71 100.0 SNHG3-202 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 1987.00 69.74 213.76 100.0 SNORD124-201 snoRNA skeletal muscle satellite cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 3286.00 77.89 353.51 91.28 RPL3-212 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3.00 0.07 0.32 100.0 RPL3-212 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 358.00 3.47 38.51 100.0 RPL13A-212 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 8891.00 86.16 956.49 100.0 RPL13A-212 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 7256.00 72.06 780.60 100.0 RPL7A-207 protein coding CDS not defined skeletal muscle satellite cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 1559.00 15.48 167.72 100.0 RPL7A-207 protein coding CDS not defined skeletal muscle satellite cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 11.00 0.20 1.18 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle satellite cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2791.00 49.87 300.26 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle satellite cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 611.00 10.92 65.73 100.0 RABGGTB-213 protein coding CDS not defined skeletal muscle satellite cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 15.00 0.01 1.61 100.0 RPL5-205 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 141647.00 98.56 15238.37 99.45 RPL5-205 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 23.00 1.01 2.47 100.0 RACK1-230 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 10926.00 89.13 1175.42 100.0 SNHG6-204 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 438.00 3.57 47.12 100.0 SNHG6-204 retained intron skeletal muscle satellite cell (Primary cell)