ENCFF000JJV

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of adipose (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVD
Description: Part of ENCODE experiment ENCSR000CVD. The libraries contained in this experiment come from adipose derived mesenchymal stem cell primary whole cells, hMSC-AT isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 373.00 40.68 12.22 90.1 RNU5A-1-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 14.88 1.62 0.49 17.51 RNU5A-1-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 2.00 0.22 0.07 100.0 RNU5A-1-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 61.91 6.75 2.03 28.66 RNU5A-1-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 34.00 2.09 1.11 100.0 7SK.1-201 misc RNA mesenchymal stem cell of adipose (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 637.00 39.13 20.88 100.0 7SK.1-201 misc RNA mesenchymal stem cell of adipose (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 43.00 1.52 1.41 97.73 SNORD83A-201 snoRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 1.00 0.04 0.03 100.0 SNORD83A-201 snoRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1934.00 58.11 63.38 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 740.00 22.24 24.25 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 9534.00 90.79 312.44 100.0 SNHG3-202 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 3253.00 73.25 106.60 100.0 SNORD124-201 snoRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 11.00 0.17 0.36 100.0 RPL3-212 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 3084.00 47.53 101.07 56.91 RPL3-212 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 65035.00 90.68 2131.25 100.0 RPL13A-212 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 849.00 1.18 27.82 100.0 RPL13A-212 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 2.00 0.00 0.07 100.0 RPL13A-212 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1.00 0.00 0.03 100.0 RPL13A-212 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 41936.00 71.54 1374.28 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of adipose (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 11022.00 18.80 361.20 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of adipose (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 8.00 0.10 0.26 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of adipose (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2677.00 34.20 87.73 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of adipose (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1362.00 17.40 44.63 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of adipose (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 65.00 0.01 2.13 100.0 RPL5-205 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 582382.00 98.81 19085.18 99.56 RPL5-205 retained intron mesenchymal stem cell of adipose (Primary cell)