ENCFF000JIX

Library Details

Organism: Homo Sapiens
Biosample: hair follicle dermal papilla cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVC
Description: Part of ENCODE experiment ENCSR000CVC. The libraries contained in this experiment come from hair follicle dermal papilla primary whole cells, HFDPC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 92.87 9.87 9.84 34.78 RNU5A-1-201 snRNA hair follicle dermal papilla cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 357.00 37.94 37.84 84.8 RNU5A-1-201 snRNA hair follicle dermal papilla cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 23.97 2.55 2.54 18.16 RNU5A-1-201 snRNA hair follicle dermal papilla cell (Primary cell)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 1.00 0.31 0.11 100.0 RNU5B-1-201 snRNA hair follicle dermal papilla cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 14.00 1.77 1.48 100.0 7SK.1-201 misc RNA hair follicle dermal papilla cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 411.00 52.03 43.56 100.0 7SK.1-201 misc RNA hair follicle dermal papilla cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 13.00 0.83 1.38 100.0 SNORD83A-201 snoRNA hair follicle dermal papilla cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 708.00 70.03 75.04 100.0 SNORD12B-201 snoRNA hair follicle dermal papilla cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 140.00 13.85 14.84 100.0 SNORD12B-201 snoRNA hair follicle dermal papilla cell (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 6954.00 89.97 737.03 100.0 SNHG3-202 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 1402.00 75.70 148.59 100.0 SNORD124-201 snoRNA hair follicle dermal papilla cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2955.00 55.78 313.19 69.97 RPL3-212 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 15.00 0.28 1.59 100.0 RPL3-212 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 994.00 3.38 105.35 100.0 RPL13A-212 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 25422.00 86.39 2694.40 100.0 RPL13A-212 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 7354.00 62.86 779.43 100.0 RPL7A-207 protein coding CDS not defined hair follicle dermal papilla cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 3077.00 26.30 326.12 100.0 RPL7A-207 protein coding CDS not defined hair follicle dermal papilla cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 4.00 0.10 0.42 100.0 RABGGTB-213 protein coding CDS not defined hair follicle dermal papilla cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1732.00 44.91 183.57 100.0 RABGGTB-213 protein coding CDS not defined hair follicle dermal papilla cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 400.00 10.37 42.39 100.0 RABGGTB-213 protein coding CDS not defined hair follicle dermal papilla cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 21.00 0.01 2.23 100.0 RPL5-205 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 171790.00 98.69 18207.53 99.56 RPL5-205 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 370.00 26.15 39.22 100.0 RACK1-230 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 36398.00 88.88 3857.72 100.0 SNHG6-204 retained intron hair follicle dermal papilla cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 2453.00 5.99 259.99 100.0 SNHG6-204 retained intron hair follicle dermal papilla cell (Primary cell)