ENCFF000KFC

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVM
Description: Part of ENCODE experiment ENCSR000CVM. RNA-seq on skin melanocytes primary whole cells (NHEM-M2) from rRNA-depleted Total RNA less than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 43.00 10.34 2.11 79.63 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 86.83 20.87 4.26 47.71 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 90.93 21.86 4.46 60.22 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 4.00 0.43 0.20 100.0 7SK.1-201 misc RNA melanocyte of skin (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 257.00 27.49 12.61 100.0 7SK.1-201 misc RNA melanocyte of skin (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 17.00 0.89 0.83 100.0 SNORD83A-201 snoRNA melanocyte of skin (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 1787.00 22.86 87.67 100.0 SNORD12B-201 snoRNA melanocyte of skin (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 4540.00 58.09 222.74 100.0 SNORD12B-201 snoRNA melanocyte of skin (Primary cell)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1.00 0.98 0.05 100.0 SNORD62B-201 snoRNA melanocyte of skin (Primary cell)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1.00 0.11 0.05 100.0 TMEM107-204 protein coding melanocyte of skin (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 14533.00 91.62 713.01 100.0 SNHG3-202 retained intron melanocyte of skin (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 5875.00 74.61 288.24 100.0 SNORD124-201 snoRNA melanocyte of skin (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 23.00 0.20 1.13 100.0 RPL3-212 retained intron melanocyte of skin (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 8665.00 75.79 425.12 87.67 RPL3-212 retained intron melanocyte of skin (Primary cell)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 2.00 0.01 0.10 100.0 RPL13A-212 retained intron melanocyte of skin (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 23478.00 76.53 1151.86 100.0 RPL13A-212 retained intron melanocyte of skin (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 1522.00 4.96 74.67 100.0 RPL13A-212 retained intron melanocyte of skin (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 8079.00 29.43 396.37 100.0 RPL7A-207 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 16693.00 60.81 818.98 100.0 RPL7A-207 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 8945.00 49.76 438.85 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 2374.00 13.21 116.47 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 12.00 0.07 0.59 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 23.00 0.01 1.13 100.0 RPL5-205 retained intron melanocyte of skin (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 309807.00 98.76 15199.54 99.55 RPL5-205 retained intron melanocyte of skin (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 86.00 3.83 4.22 100.0 RACK1-230 retained intron melanocyte of skin (Primary cell)