ENCFF000JFN

Library Details

Organism: Homo Sapiens
Biosample: articular chondrocyte of knee joint (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVB
Description: Part of ENCODE experiment ENCSR000CVB. The libraries contained in this experiment come from knee joint chondrocytes primary whole cells, HCH isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 104.00 31.80 8.92 81.25 RNU5A-1-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 1.00 0.31 0.09 100.0 RNU5A-1-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 19.63 6.00 1.68 23.1 RNU5A-1-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 0.83 0.25 0.07 3.06 RNU5A-1-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 10.00 2.08 0.86 100.0 7SK.1-201 misc RNA articular chondrocyte of knee joint (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 164.00 34.17 14.07 100.0 7SK.1-201 misc RNA articular chondrocyte of knee joint (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 21.00 1.80 1.80 100.0 SNORD83A-201 snoRNA articular chondrocyte of knee joint (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 723.00 26.89 62.02 100.0 SNORD12B-201 snoRNA articular chondrocyte of knee joint (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1507.00 56.04 129.26 100.0 SNORD12B-201 snoRNA articular chondrocyte of knee joint (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 4451.00 88.09 381.78 100.0 SNHG3-202 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 1.00 1.61 0.09 100.0 SNORD127-201 snoRNA articular chondrocyte of knee joint (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 1124.00 73.95 96.41 100.0 SNORD124-201 snoRNA articular chondrocyte of knee joint (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 4.00 0.07 0.34 100.0 RPL3-212 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2520.00 42.37 216.15 55.57 RPL3-212 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 842.00 4.72 72.22 100.0 RPL13A-212 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 14267.00 79.94 1223.75 100.0 RPL13A-212 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 4670.00 33.82 400.57 100.0 RPL7A-207 protein coding CDS not defined articular chondrocyte of knee joint (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 7712.00 55.85 661.50 100.0 RPL7A-207 protein coding CDS not defined articular chondrocyte of knee joint (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 882.00 15.27 75.65 100.0 RABGGTB-213 protein coding CDS not defined articular chondrocyte of knee joint (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1794.00 31.05 153.88 100.0 RABGGTB-213 protein coding CDS not defined articular chondrocyte of knee joint (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 162553.00 98.46 13942.96 99.41 RPL5-205 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 303.00 28.00 25.99 100.0 RACK1-230 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 91584.00 89.10 7855.60 100.0 SNHG6-204 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 6676.00 6.49 572.63 100.0 SNHG6-204 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 45.00 9.39 3.86 100.0 WDR74-204 protein coding articular chondrocyte of knee joint (Primary cell)