ENCFF000JJI

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of adipose (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVD
Description: Part of ENCODE experiment ENCSR000CVD. The libraries contained in this experiment come from adipose derived mesenchymal stem cell primary whole cells, hMSC-AT isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_12_95_+ 12–95 7.00 1.03 0.29 100.0 RNA5S12-201 rRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 36.37 5.17 1.49 40.87 RNU5A-1-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 61.91 8.79 2.54 36.0 RNU5A-1-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 202.00 28.69 8.29 77.39 RNU5A-1-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 1.00 0.16 0.04 100.0 RNA5SP202-201 rRNA pseudogene mesenchymal stem cell of adipose (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 551.00 32.58 22.60 100.0 7SK.1-201 misc RNA mesenchymal stem cell of adipose (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 4.00 0.24 0.16 100.0 7SK.1-201 misc RNA mesenchymal stem cell of adipose (Primary cell)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 1.00 3.03 0.04 50.0 SNORD88A-201 snoRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1873.00 64.21 76.84 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 474.00 16.25 19.44 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 15.00 2.02 0.62 100.0 TMEM107-204 protein coding mesenchymal stem cell of adipose (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 9148.00 93.01 375.27 100.0 SNHG3-202 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 2996.00 66.34 122.90 100.0 SNORD124-201 snoRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 3506.00 46.96 143.83 57.15 RPL3-212 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 1264.00 2.15 51.85 100.0 RPL13A-212 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 51320.00 87.15 2105.28 100.0 RPL13A-212 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 8960.00 17.99 367.56 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of adipose (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 36403.00 73.10 1493.35 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of adipose (Primary cell)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1.00 0.07 0.04 100.0 RN7SL2-201 misc RNA mesenchymal stem cell of adipose (Primary cell)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 1.00 0.01 0.04 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of adipose (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2860.00 33.41 117.32 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of adipose (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1319.00 15.41 54.11 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of adipose (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 2.00 0.02 0.08 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of adipose (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 41.00 0.01 1.68 100.0 RPL5-205 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 432510.00 98.65 17742.68 99.43 RPL5-205 retained intron mesenchymal stem cell of adipose (Primary cell)