ENCFF000KEC

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVK
Description: Part of ENCODE experiment ENCSR000CVK. RNA-seq on human skin melanocytes primary whole cells (NHEM.f-M2) from rRNA-depleted Total RNA greater than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 50.00 11.96 4.43 60.24 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 52.91 12.66 4.68 52.91 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 64.18 15.35 5.68 49.75 RNU5A-1-201 snRNA melanocyte of skin (Primary cell)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 1.00 100.00 0.09 100.0 SNORD38A-201 snoRNA melanocyte of skin (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 13.00 0.70 1.15 100.0 7SK.1-201 misc RNA melanocyte of skin (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 471.00 25.23 41.68 100.0 7SK.1-201 misc RNA melanocyte of skin (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 15.00 1.09 1.33 88.24 SNORD83A-201 snoRNA melanocyte of skin (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 12.00 0.87 1.06 100.0 SNORD83A-201 snoRNA melanocyte of skin (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1566.00 55.63 138.59 100.0 SNORD12B-201 snoRNA melanocyte of skin (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 493.00 17.51 43.63 100.0 SNORD12B-201 snoRNA melanocyte of skin (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 7059.00 79.88 624.72 100.0 SNHG3-202 retained intron melanocyte of skin (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 2336.00 67.01 206.74 100.0 SNORD124-201 snoRNA melanocyte of skin (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 18.00 0.37 1.59 100.0 RPL3-212 retained intron melanocyte of skin (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2357.00 48.61 208.60 72.68 RPL3-212 retained intron melanocyte of skin (Primary cell)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 2.00 0.01 0.18 100.0 RPL13A-212 retained intron melanocyte of skin (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 17645.00 83.51 1561.59 100.0 RPL13A-212 retained intron melanocyte of skin (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 420.00 1.99 37.17 100.0 RPL13A-212 retained intron melanocyte of skin (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 2083.00 22.63 184.35 100.0 RPL7A-207 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 4626.00 50.26 409.40 100.0 RPL7A-207 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 2.00 0.18 0.18 100.0 RN7SL2-201 misc RNA melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 6.00 0.05 0.53 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 4529.00 40.09 400.82 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1647.00 14.58 145.76 100.0 RABGGTB-213 protein coding CDS not defined melanocyte of skin (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 38.00 0.02 3.36 100.0 RPL5-205 retained intron melanocyte of skin (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 195963.00 98.56 17342.81 99.66 RPL5-205 retained intron melanocyte of skin (Primary cell)