ENCFF000JEI

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of the aortic adventitia (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUV
Description: Part of ENCODE experiment ENCSR000CUV. The libraries contained in this experiment come from aortic adventital fibroblast primary whole cells, HAoAF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 102.00 21.07 5.39 72.86 RNU5A-1-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 111.74 23.09 5.91 54.51 RNU5A-1-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 69.44 14.35 3.67 42.86 RNU5A-1-201 snRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 9.00 0.84 0.48 100.0 7SK.1-201 misc RNA fibroblast of the aortic adventitia (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 464.00 43.32 24.52 100.0 7SK.1-201 misc RNA fibroblast of the aortic adventitia (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 1.00 0.10 0.05 100.0 SNORD83A-201 snoRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 2.00 0.20 0.11 100.0 SNORD83A-201 snoRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 1713.00 33.47 90.53 100.0 SNORD12B-201 snoRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 2562.00 50.06 135.40 100.0 SNORD12B-201 snoRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 7129.00 83.45 376.77 100.0 SNHG3-202 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 3213.00 68.73 169.81 100.0 SNORD124-201 snoRNA fibroblast of the aortic adventitia (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 4884.00 63.83 258.12 75.21 RPL3-212 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3.00 0.04 0.16 100.0 RPL3-212 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 1.00 0.00 0.05 100.0 RPL13A-212 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 717.00 2.95 37.89 100.0 RPL13A-212 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 17365.00 71.52 917.74 100.0 RPL13A-212 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 10443.00 49.15 551.91 100.0 RPL7A-207 protein coding CDS not defined fibroblast of the aortic adventitia (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 7854.00 36.97 415.08 100.0 RPL7A-207 protein coding CDS not defined fibroblast of the aortic adventitia (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 4337.00 44.25 229.21 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of the aortic adventitia (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1250.00 12.75 66.06 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of the aortic adventitia (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 14.00 0.14 0.74 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of the aortic adventitia (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 300162.00 98.72 15863.48 99.56 RPL5-205 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 37.00 0.01 1.96 100.0 RPL5-205 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 71.00 3.91 3.75 100.0 RACK1-230 retained intron fibroblast of the aortic adventitia (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 8180.00 13.90 432.31 100.0 SNHG6-204 retained intron fibroblast of the aortic adventitia (Primary cell)