ENCFF000JLG

Library Details

Organism: Homo Sapiens
Biosample: osteoblast (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUW
Description: Part of ENCODE experiment ENCSR000CUW. The libraries contained in this experiment come from osteoblast primary whole cells, HOB isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_12_95_+ 12–95 2.00 9.09 0.19 100.0 RNA5S12-201 rRNA osteoblast (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 68.61 20.60 6.58 60.72 RNU5A-1-201 snRNA osteoblast (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 65.69 19.73 6.30 46.26 RNU5A-1-201 snRNA osteoblast (Primary cell)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 42.00 12.61 4.03 82.35 RNU5A-1-201 snRNA osteoblast (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 6.00 1.00 0.58 100.0 7SK.1-201 misc RNA osteoblast (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 252.00 41.79 24.16 100.0 7SK.1-201 misc RNA osteoblast (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 3.00 0.57 0.29 100.0 SNORD83A-201 snoRNA osteoblast (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1898.00 55.71 181.96 100.0 SNORD12B-201 snoRNA osteoblast (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 847.00 24.86 81.20 100.0 SNORD12B-201 snoRNA osteoblast (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 7837.00 90.26 751.31 100.0 SNHG3-202 retained intron osteoblast (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 2092.00 76.29 200.55 100.0 SNORD124-201 snoRNA osteoblast (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 3090.00 67.50 296.23 78.61 RPL3-212 retained intron osteoblast (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3.00 0.07 0.29 100.0 RPL3-212 retained intron osteoblast (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 555.00 4.64 53.21 100.0 RPL13A-212 retained intron osteoblast (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 9563.00 79.97 916.78 100.0 RPL13A-212 retained intron osteoblast (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 3007.00 39.99 288.27 100.0 RPL7A-207 protein coding CDS not defined osteoblast (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 3552.00 47.24 340.52 100.0 RPL7A-207 protein coding CDS not defined osteoblast (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 2.00 0.03 0.19 100.0 RABGGTB-213 protein coding CDS not defined osteoblast (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2832.00 37.25 271.50 100.0 RABGGTB-213 protein coding CDS not defined osteoblast (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1410.00 18.55 135.17 100.0 RABGGTB-213 protein coding CDS not defined osteoblast (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 14.00 0.01 1.34 100.0 RPL5-205 retained intron osteoblast (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 156876.00 98.89 15039.29 99.56 RPL5-205 retained intron osteoblast (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 50.00 4.01 4.79 100.0 RACK1-230 retained intron osteoblast (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 25512.00 84.40 2445.77 100.0 SNHG6-204 retained intron osteoblast (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 2823.00 9.34 270.63 100.0 SNHG6-204 retained intron osteoblast (Primary cell)