sncRNA detail

ENST00000833535.1_763_828_+

Derived from ENST00000833535.1 • Homo Sapiens

68 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
TAF12-DT-204
Gene
TAF12-DT (ENSG00000229388.2)
Precursor type
lncRNA
Sequence
AAAAAGGGCTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTCTGCGTGCGGAATCGACA
Start
Start: 763
End
End: 828
Length
Length: 66
Expression (sum)
137907.00
Expression fraction
27.82
Expression (Avg non-zero)
2028.04
Expression (max)
55416.00
Expression (CPM sum)
3.52
Expression (CPM avg non-zero)
4.70
Expression (CPM max)
428.50
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
TAF12-DT-204
Transcript ID
ENST00000833535.1
Chromosome
chr1
Genomic start
28643163
Genomic end
28648805

Gene context

Gene name
TAF12-DT
Gene ID
ENSG00000229388.2
Gene type
lncRNA

Expression table

Showing 68 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REE GM12878 (Cell line) 851.00 14.67 2.19 100.00
ENCFF001REL K562 (Cell line) 1769.00 22.72 3.29 100.00
ENCFF001REQ K562 (Cell line) 1366.00 11.89 3.47 100.00
ENCFF001RER GM12878 (Cell line) 1035.00 13.09 2.14 100.00
ENCFF001RLS parietal lobe (Tissue) 2004.00 30.85 7.09 100.00
ENCFF001RLT temporal lobe (Tissue) 1570.00 23.23 2.61 100.00
ENCFF001RLU spinal cord (Tissue) 1275.00 37.35 4.33 100.00
ENCFF001RLV tongue (Tissue) 419.00 20.90 1.14 100.00
ENCFF001RLW occipital lobe (Tissue) 53.00 5.36 0.17 100.00
ENCFF001RLX spinal cord (Tissue) 5550.00 46.08 10.18 100.00
ENCFF001RLY diencephalon (Tissue) 5239.00 62.66 14.95 100.00
ENCFF001RLZ heart (Tissue) 213.00 6.33 0.20 100.00
ENCFF001RMA skin of body (Tissue) 300.00 9.21 0.74 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 102.00 5.63 0.33 100.00
ENCFF001RMC temporal lobe (Tissue) 2786.00 29.70 5.70 100.00
ENCFF001RMD uterus (Tissue) 1348.00 21.27 2.23 100.00
ENCFF001RME occipital lobe (Tissue) 138.00 11.61 0.29 100.00
ENCFF001RMF metanephros (Tissue) 116.00 4.06 0.22 100.00
ENCFF001RMG parietal lobe (Tissue) 228.00 9.49 0.97 100.00
ENCFF001RMH lung (Tissue) 2296.00 55.15 5.21 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 42.00 5.21 0.18 100.00
ENCFF001RMJ skin of body (Tissue) 820.00 23.29 2.13 100.00
ENCFF001RMK heart (Tissue) 1122.00 29.20 1.95 100.00
ENCFF001RML cerebellum (Tissue) 548.00 11.90 1.01 100.00
ENCFF001RMM frontal cortex (Tissue) 140.00 6.15 0.23 100.00
ENCFF001RMN uterus (Tissue) 258.00 5.30 0.49 100.00
ENCFF001RMO cerebellum (Tissue) 270.00 8.98 0.52 100.00
ENCFF001RMP frontal cortex (Tissue) 332.00 13.15 0.53 100.00
ENCFF001RMQ lung (Tissue) 297.00 9.43 0.45 100.00
ENCFF001RMR thyroid gland (Tissue) 679.00 22.73 1.51 100.00
ENCFF001RMS diencephalon (Tissue) 3939.00 59.95 8.17 100.00
ENCFF001RMT thyroid gland (Tissue) 122.00 5.78 0.16 100.00
ENCFF001RMU metanephros (Tissue) 2156.00 51.54 4.52 100.00
ENCFF001RMV tongue (Tissue) 72.00 2.33 0.14 100.00
ENCFF001RTT urinary bladder (Tissue) 288.00 12.74 0.78 100.00
ENCFF001RTU liver (Tissue) 644.00 14.31 1.92 100.00
ENCFF004BLT GM23338 (Cell line) 27858.00 69.95 33.43 100.00
ENCFF004YAN Karpas-422 (Cell line) 5757.00 26.19 40.12 100.00
ENCFF015UJX spleen (Tissue) 8.00 0.33 0.05 100.00
ENCFF023EVA A375 (Cell line) 29.00 7.75 0.20 100.00
ENCFF062TYF GM23248 (Cell line) 78.00 41.05 3.34 100.00
ENCFF076JME ovary (Tissue) 2.00 0.66 0.01 100.00
ENCFF106XDA esophagus muscularis mucosa (Tissue) 3.00 1.50 0.01 100.00
ENCFF192PKY upper lobe of left lung (Tissue) 30.00 5.58 0.18 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 443.00 16.81 0.37 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 392.00 11.35 0.29 100.00
ENCFF226BCZ Karpas-422 (Cell line) 2509.00 20.40 16.56 100.00
ENCFF295DXJ smooth muscle cell (In vitro differentiated cells) 1129.00 26.48 1.33 100.00
ENCFF299ETH OCI-LY7 (Cell line) 1282.00 25.98 13.28 100.00
ENCFF429ILE esophagus squamous epithelium (Tissue) 6.00 1.05 0.03 100.00
ENCFF450POH GM23338 (Cell line) 55416.00 74.12 428.50 100.00
ENCFF476SLG A375 (Cell line) 16.00 5.67 0.13 100.00
ENCFF510IHL esophagus squamous epithelium (Tissue) 2.00 0.15 0.01 100.00
ENCFF516CUT adrenal gland (Tissue) 2.00 0.60 0.01 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 91.00 11.29 0.08 100.00
ENCFF521RDG OCI-LY7 (Cell line) 1433.00 26.85 14.55 100.00
ENCFF540WGH HT-29 (Cell line) 16.00 10.88 0.19 100.00
ENCFF590YKZ GM23248 (Cell line) 59.00 36.88 1.15 100.00
ENCFF631JZF sigmoid colon (Tissue) 199.00 52.93 0.93 100.00
ENCFF643IED upper lobe of left lung (Tissue) 80.00 15.53 0.59 100.00
ENCFF655CDV sigmoid colon (Tissue) 1.00 0.39 0.00 100.00
ENCFF728EUS sigmoid colon (Tissue) 39.00 5.28 0.25 100.00
ENCFF800ZUT tibial nerve (Tissue) 6.00 2.88 0.05 100.00
ENCFF834CUR HT-29 (Cell line) 23.00 8.30 0.30 100.00
ENCFF903MJZ subcutaneous adipose tissue (Tissue) 3.00 0.91 0.01 100.00
ENCFF908XAD omental fat pad (Tissue) 1.00 0.39 0.00 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 468.00 32.77 0.52 100.00
ENCFF994BMY neural progenitor cell (In vitro differentiated cells) 139.00 6.89 0.08 100.00

RNA secondary structure