sncRNA detail

ENST00000732834.1_1719_1741_+

Derived from ENST00000732834.1 • Homo Sapiens

89 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
MIR200CHG-202
Gene
MIR200CHG (ENSG00000257084.3)
Precursor type
lncRNA
Sequence
TAATACTGCCGGGTAATGATGGA
Start
Start: 1719
End
End: 1741
Length
Length: 23
Expression (sum)
76407.00
Expression fraction
15.00
Expression (Avg non-zero)
858.51
Expression (max)
9112.00
Expression (CPM sum)
1.97
Expression (CPM avg non-zero)
2.28
Expression (CPM max)
58.50
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
MIR200CHG-202
Transcript ID
ENST00000732834.1
Chromosome
chr12
Genomic start
6962024
Genomic end
6964458

Gene context

Gene name
MIR200CHG
Gene ID
ENSG00000257084.3
Gene type
lncRNA

Expression table

Showing 89 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REE GM12878 (Cell line) 39.00 1.14 0.10 100.00
ENCFF001REL K562 (Cell line) 2.00 1.71 0.00 100.00
ENCFF001REQ K562 (Cell line) 2.00 0.61 0.01 100.00
ENCFF001RER GM12878 (Cell line) 30.00 1.85 0.06 100.00
ENCFF001RLS parietal lobe (Tissue) 1.00 10.00 0.00 100.00
ENCFF001RLT temporal lobe (Tissue) 4.00 5.48 0.01 100.00
ENCFF001RLU spinal cord (Tissue) 1.00 9.09 0.00 100.00
ENCFF001RLV tongue (Tissue) 1388.00 32.38 3.77 100.00
ENCFF001RLX spinal cord (Tissue) 3.00 12.00 0.01 100.00
ENCFF001RLY diencephalon (Tissue) 1.00 12.50 0.00 100.00
ENCFF001RLZ heart (Tissue) 7.00 5.19 0.01 100.00
ENCFF001RMA skin of body (Tissue) 2230.00 13.82 5.49 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 47.00 4.93 0.15 100.00
ENCFF511CAA neuronal stem cell (In vitro differentiated cells) 56.00 16.37 0.43 100.00
ENCFF001RMC temporal lobe (Tissue) 1.00 1.35 0.00 100.00
ENCFF001RMD uterus (Tissue) 712.00 29.65 1.18 100.00
ENCFF001RME occipital lobe (Tissue) 1.00 5.26 0.00 100.00
ENCFF001RMF metanephros (Tissue) 696.00 16.53 1.29 100.00
ENCFF001RMH lung (Tissue) 5220.00 18.45 11.84 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 1.00 5.56 0.00 100.00
ENCFF001RMJ skin of body (Tissue) 2011.00 22.55 5.23 100.00
ENCFF001RMK heart (Tissue) 3.00 6.12 0.01 100.00
ENCFF001RML cerebellum (Tissue) 8.00 10.00 0.01 100.00
ENCFF001RMN uterus (Tissue) 471.00 22.18 0.90 100.00
ENCFF001RMO cerebellum (Tissue) 1.00 2.27 0.00 100.00
ENCFF001RMQ lung (Tissue) 3809.00 18.27 5.73 100.00
ENCFF001RMR thyroid gland (Tissue) 9.00 7.09 0.02 100.00
ENCFF001RMS diencephalon (Tissue) 1.00 7.14 0.00 100.00
ENCFF001RMT thyroid gland (Tissue) 2646.00 4.45 3.49 100.00
ENCFF001RMU metanephros (Tissue) 1275.00 28.66 2.67 100.00
ENCFF001RMV tongue (Tissue) 845.00 10.84 1.65 100.00
ENCFF001RTT urinary bladder (Tissue) 1336.00 21.51 3.60 100.00
ENCFF001RTU liver (Tissue) 15.00 5.66 0.04 100.00
ENCFF004BLT GM23338 (Cell line) 310.00 29.52 0.37 100.00
ENCFF004YAN Karpas-422 (Cell line) 13.00 1.64 0.09 100.00
ENCFF015UJX spleen (Tissue) 6.00 10.00 0.03 100.00
ENCFF059WHB prostate gland (Tissue) 2152.00 25.92 8.04 100.00
ENCFF073SVL transverse colon (Tissue) 606.00 28.68 2.91 100.00
ENCFF076JME ovary (Tissue) 43.00 12.61 0.19 100.00
ENCFF081QYT esophagus squamous epithelium (Tissue) 1112.00 17.72 2.03 100.00
ENCFF192PKY upper lobe of left lung (Tissue) 216.00 4.39 1.30 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 19.00 26.76 0.02 100.00
ENCFF195CBI testis (Tissue) 5.00 15.62 0.02 100.00
ENCFF211GIU transverse colon (Tissue) 496.00 29.61 2.42 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 643.00 26.01 0.48 100.00
ENCFF225QQQ mesenchymal stem cell (In vitro differentiated cells) 4.00 16.67 0.02 100.00
ENCFF226BCZ Karpas-422 (Cell line) 21.00 4.09 0.14 100.00
ENCFF242SEA body of pancreas (Tissue) 244.00 1.20 1.06 100.00
ENCFF261XRS stomach (Tissue) 756.00 16.09 3.68 100.00
ENCFF274FTM prostate gland (Tissue) 1242.00 20.16 4.89 100.00
ENCFF276PUU mesenchymal stem cell (In vitro differentiated cells) 5.00 18.52 0.02 100.00
ENCFF295DXJ smooth muscle cell (In vitro differentiated cells) 174.00 15.01 0.20 100.00
ENCFF310THB vagina (Tissue) 271.00 43.99 1.12 100.00
ENCFF316MTC trophoblast cell (In vitro differentiated cells) 9112.00 38.03 58.50 100.00
ENCFF379KTQ stomach (Tissue) 1573.00 9.86 7.12 100.00
ENCFF381DXM transverse colon (Tissue) 859.00 17.95 3.34 100.00
ENCFF429ILE esophagus squamous epithelium (Tissue) 627.00 10.34 3.12 100.00
ENCFF450POH GM23338 (Cell line) 177.00 12.94 1.37 100.00
ENCFF476IAU esophagus squamous epithelium (Tissue) 2199.00 29.40 7.25 100.00
ENCFF495VAK Peyer's patch (Tissue) 1004.00 38.90 2.00 100.00
ENCFF503PBD mesendoderm (In vitro differentiated cells) 2292.00 21.06 21.73 100.00
ENCFF510IHL esophagus squamous epithelium (Tissue) 1025.00 19.06 4.05 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 3073.00 8.00 2.57 100.00
ENCFF534JKI spleen (Tissue) 5.00 9.80 0.02 100.00
ENCFF540WGH HT-29 (Cell line) 93.00 16.88 1.12 100.00
ENCFF546NNZ uterus (Tissue) 1.00 12.50 0.00 100.00
ENCFF551ARD thyroid gland (Tissue) 223.00 30.26 1.51 100.00
ENCFF574WUG right lobe of liver (Tissue) 7.00 7.95 0.06 100.00
ENCFF583SZV stomach (Tissue) 904.00 10.76 3.89 100.00
ENCFF590YKZ GM23248 (Cell line) 1.00 50.00 0.02 100.00
ENCFF625OBY sigmoid colon (Tissue) 3.00 17.65 0.02 100.00
ENCFF643IED upper lobe of left lung (Tissue) 652.00 7.69 4.82 100.00
ENCFF645FQS transverse colon (Tissue) 476.00 20.20 2.51 100.00
ENCFF685KEG stomach (Tissue) 3119.00 7.14 17.87 100.00
ENCFF694VGD upper lobe of left lung (Tissue) 1075.00 7.29 6.05 100.00
ENCFF714LDG trophoblast cell (In vitro differentiated cells) 7925.00 35.57 52.50 100.00
ENCFF720JFQ mesendoderm (In vitro differentiated cells) 2353.00 16.35 21.61 100.00
ENCFF728EUS sigmoid colon (Tissue) 1.00 1.35 0.01 100.00
ENCFF768XBE upper lobe of left lung (Tissue) 371.00 5.46 2.68 100.00
ENCFF797VVQ esophagus muscularis mucosa (Tissue) 4.00 36.36 0.03 100.00
ENCFF811DGS gastroesophageal sphincter (Tissue) 7.00 30.43 0.03 100.00
ENCFF834CUR HT-29 (Cell line) 121.00 25.53 1.60 100.00
ENCFF853XSN Peyer's patch (Tissue) 4102.00 26.08 12.39 100.00
ENCFF903MJZ subcutaneous adipose tissue (Tissue) 3.00 14.29 0.01 100.00
ENCFF908XAD omental fat pad (Tissue) 2.00 16.67 0.00 100.00
ENCFF936FXF neuronal stem cell (In vitro differentiated cells) 33.00 13.87 0.24 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 1654.00 20.52 1.85 100.00
ENCFF993BFO body of pancreas (Tissue) 84.00 0.81 0.81 100.00
ENCFF994BMY neural progenitor cell (In vitro differentiated cells) 37.00 32.46 0.02 100.00

RNA secondary structure