sncRNA detail

tRNA-transcript-chrX-3876801_1_55_+

Derived from TRNA-TRANSCRIPT-CHRX-3876801 • Homo Sapiens

75 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
TRNA-TRANSCRIPT-CHRX-3876801
Gene
tRNA-gene-chrX-3876801 (TRNA-GENE-CHRX-3876801)
Precursor type
Ile tRNA
Sequence
GGCCGGTTAGCTCAGTTGGTAAGAGCGTGGTGCTGATAACACCAAGGTCGCGGGC
Start
Start: 1
End
End: 55
Length
Length: 55
Expression (sum)
52029.00
Expression fraction
55.42
Expression (Avg non-zero)
693.72
Expression (max)
11578.00
Expression (CPM sum)
1.35
Expression (CPM avg non-zero)
1.73
Expression (CPM max)
7.02
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
TRNA-TRANSCRIPT-CHRX-3876801
Transcript ID
TRNA-TRANSCRIPT-CHRX-3876801
Chromosome
chrX
Genomic start
3876801
Genomic end
3876874

Gene context

Gene name
tRNA-gene-chrX-3876801
Gene ID
TRNA-GENE-CHRX-3876801
Gene type
Ile_tRNA

Expression table

Showing 75 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REE GM12878 (Cell line) 290.00 2.81 0.75 100.00
ENCFF001REL K562 (Cell line) 132.00 8.14 0.25 100.00
ENCFF001REQ K562 (Cell line) 104.00 2.42 0.26 100.00
ENCFF001RER GM12878 (Cell line) 282.00 6.56 0.58 100.00
ENCFF001RLS parietal lobe (Tissue) 2.00 18.18 0.01 100.00
ENCFF001RLT temporal lobe (Tissue) 2.00 2.67 0.00 100.00
ENCFF001RLV tongue (Tissue) 1.00 0.49 0.00 100.00
ENCFF001RLW occipital lobe (Tissue) 2.00 18.18 0.01 100.00
ENCFF001RLX spinal cord (Tissue) 3.00 1.07 0.01 100.00
ENCFF001RLY diencephalon (Tissue) 1.00 6.67 0.00 100.00
ENCFF001RLZ heart (Tissue) 4.00 1.14 0.00 100.00
ENCFF001RMA skin of body (Tissue) 1.00 0.11 0.00 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 3.00 0.23 0.01 100.00
ENCFF001RMC temporal lobe (Tissue) 2.00 2.99 0.00 100.00
ENCFF001RMD uterus (Tissue) 42.00 16.09 0.07 100.00
ENCFF001RME occipital lobe (Tissue) 1.00 11.11 0.00 100.00
ENCFF001RMG parietal lobe (Tissue) 1.00 1.49 0.00 100.00
ENCFF001RMH lung (Tissue) 1.00 1.64 0.00 100.00
ENCFF001RMK heart (Tissue) 1.00 0.54 0.00 100.00
ENCFF001RML cerebellum (Tissue) 8.00 5.33 0.01 100.00
ENCFF001RMM frontal cortex (Tissue) 7.00 28.00 0.01 100.00
ENCFF001RMN uterus (Tissue) 6.00 5.61 0.01 100.00
ENCFF001RMO cerebellum (Tissue) 2.00 1.82 0.00 100.00
ENCFF001RMP frontal cortex (Tissue) 6.00 31.58 0.01 100.00
ENCFF001RMQ lung (Tissue) 1.00 1.54 0.00 100.00
ENCFF001RMR thyroid gland (Tissue) 1.00 0.79 0.00 100.00
ENCFF001RMU metanephros (Tissue) 1.00 1.82 0.00 100.00
ENCFF001RMV tongue (Tissue) 7.00 1.17 0.01 100.00
ENCFF001RTT urinary bladder (Tissue) 2.00 0.70 0.01 100.00
ENCFF001RTU liver (Tissue) 10.00 4.46 0.03 100.00
ENCFF004BLT GM23338 (Cell line) 1123.00 74.52 1.35 100.00
ENCFF004YAN Karpas-422 (Cell line) 7.00 21.21 0.05 100.00
ENCFF015UJX spleen (Tissue) 8.00 7.34 0.05 100.00
ENCFF023EVA A375 (Cell line) 2.00 66.67 0.01 100.00
ENCFF059WHB prostate gland (Tissue) 1.00 3.45 0.00 100.00
ENCFF081QYT esophagus squamous epithelium (Tissue) 2.00 5.26 0.00 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 11303.00 97.90 9.32 100.00
ENCFF195CBI testis (Tissue) 555.00 87.96 2.76 100.00
ENCFF211GIU transverse colon (Tissue) 2.00 2.99 0.01 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 6227.00 95.07 4.64 100.00
ENCFF225QQQ mesenchymal stem cell (In vitro differentiated cells) 1.00 0.23 0.00 100.00
ENCFF226BCZ Karpas-422 (Cell line) 9.00 29.03 0.06 100.00
ENCFF261XRS stomach (Tissue) 3.00 5.66 0.01 100.00
ENCFF274FTM prostate gland (Tissue) 2.00 5.26 0.01 100.00
ENCFF276PUU mesenchymal stem cell (In vitro differentiated cells) 2.00 0.37 0.01 100.00
ENCFF295DXJ smooth muscle cell (In vitro differentiated cells) 6970.00 95.61 8.18 100.00
ENCFF316MTC trophoblast cell (In vitro differentiated cells) 1.00 0.11 0.01 100.00
ENCFF381DXM transverse colon (Tissue) 11.00 3.03 0.04 100.00
ENCFF400GBK spleen (Tissue) 5.00 9.80 0.02 100.00
ENCFF429ILE esophagus squamous epithelium (Tissue) 22.00 15.17 0.11 100.00
ENCFF450POH GM23338 (Cell line) 852.00 50.12 6.59 100.00
ENCFF476IAU esophagus squamous epithelium (Tissue) 19.00 26.76 0.06 100.00
ENCFF476SLG A375 (Cell line) 1.00 50.00 0.01 100.00
ENCFF478BJL testis (Tissue) 548.00 89.84 3.43 100.00
ENCFF503PBD mesendoderm (In vitro differentiated cells) 13.00 0.68 0.12 100.00
ENCFF510IHL esophagus squamous epithelium (Tissue) 2.00 3.17 0.01 100.00
ENCFF516CUT adrenal gland (Tissue) 56.00 26.54 0.31 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 6959.00 94.38 5.83 100.00
ENCFF534JKI spleen (Tissue) 6.00 8.96 0.02 100.00
ENCFF551ARD thyroid gland (Tissue) 1.00 6.67 0.01 100.00
ENCFF574WUG right lobe of liver (Tissue) 25.00 8.80 0.21 100.00
ENCFF583SZV stomach (Tissue) 3.00 8.57 0.01 100.00
ENCFF643IED upper lobe of left lung (Tissue) 1.00 1.20 0.01 100.00
ENCFF655CDV sigmoid colon (Tissue) 7.00 24.14 0.03 100.00
ENCFF657CXK esophagus muscularis mucosa (Tissue) 2.00 6.06 0.01 100.00
ENCFF682YQJ spleen (Tissue) 9.00 8.65 0.04 100.00
ENCFF686BEE adrenal gland (Tissue) 20.00 16.39 0.13 100.00
ENCFF720JFQ mesendoderm (In vitro differentiated cells) 3.00 0.15 0.03 100.00
ENCFF744HOK gastroesophageal sphincter (Tissue) 5.00 11.36 0.02 100.00
ENCFF768XBE upper lobe of left lung (Tissue) 9.00 9.38 0.06 100.00
ENCFF797VVQ esophagus muscularis mucosa (Tissue) 3.00 5.26 0.02 100.00
ENCFF834CUR HT-29 (Cell line) 1.00 25.00 0.01 100.00
ENCFF903MJZ subcutaneous adipose tissue (Tissue) 2.00 5.56 0.01 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 4722.00 95.61 5.27 100.00
ENCFF994BMY neural progenitor cell (In vitro differentiated cells) 11578.00 98.85 7.02 100.00

RNA secondary structure