sncRNA detail

ENST00000784740.1_245_265_+

Derived from ENST00000784740.1 • Homo Sapiens

61 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
ENST00000784740
Gene
ENSG00000302165 (ENSG00000302165.1)
Precursor type
lncRNA
Sequence
TTTGGTCCCCTTCAACCAGCT
Start
Start: 245
End
End: 265
Length
Length: 21
Expression (sum)
142358.00
Expression fraction
67.87
Expression (Avg non-zero)
2333.74
Expression (max)
39060.00
Expression (CPM sum)
3.70
Expression (CPM avg non-zero)
6.43
Expression (CPM max)
126.07
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
ENST00000784740
Transcript ID
ENST00000784740.1
Chromosome
chr6
Genomic start
52136998
Genomic end
52149708

Gene context

Gene name
ENSG00000302165
Gene ID
ENSG00000302165.1
Gene type
lncRNA

Expression table

Showing 61 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001RLT temporal lobe (Tissue) 2.00 28.57 0.00 100.00
ENCFF001RLU spinal cord (Tissue) 18.00 64.29 0.06 100.00
ENCFF001RLV tongue (Tissue) 20608.00 70.16 55.90 100.00
ENCFF001RLX spinal cord (Tissue) 65.00 67.01 0.12 100.00
ENCFF001RLY diencephalon (Tissue) 3.00 75.00 0.01 100.00
ENCFF001RLZ heart (Tissue) 2589.00 51.72 2.45 100.00
ENCFF001RMA skin of body (Tissue) 156.00 67.83 0.38 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 39060.00 70.02 126.07 100.00
ENCFF001RMC temporal lobe (Tissue) 18.00 69.23 0.04 100.00
ENCFF001RMD uterus (Tissue) 17.00 54.84 0.03 100.00
ENCFF001RMF metanephros (Tissue) 2.00 22.22 0.00 100.00
ENCFF001RMH lung (Tissue) 17.00 62.96 0.04 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 21919.00 74.09 95.06 100.00
ENCFF001RMJ skin of body (Tissue) 7926.00 71.60 20.61 100.00
ENCFF001RMK heart (Tissue) 2707.00 56.28 4.70 100.00
ENCFF001RML cerebellum (Tissue) 87.00 70.73 0.16 100.00
ENCFF001RMM frontal cortex (Tissue) 6.00 60.00 0.01 100.00
ENCFF001RMN uterus (Tissue) 20.00 48.78 0.04 100.00
ENCFF001RMO cerebellum (Tissue) 79.00 79.80 0.15 100.00
ENCFF001RMQ lung (Tissue) 10.00 43.48 0.02 100.00
ENCFF001RMR thyroid gland (Tissue) 225.00 68.18 0.50 100.00
ENCFF001RMT thyroid gland (Tissue) 17602.00 66.80 23.22 100.00
ENCFF001RMU metanephros (Tissue) 4567.00 70.64 9.58 100.00
ENCFF001RMV tongue (Tissue) 22440.00 60.63 43.74 100.00
ENCFF001RTT urinary bladder (Tissue) 1225.00 70.85 3.30 100.00
ENCFF001RTU liver (Tissue) 5.00 21.74 0.01 100.00
ENCFF004BLT GM23338 (Cell line) 1.00 50.00 0.00 100.00
ENCFF059WHB prostate gland (Tissue) 105.00 80.15 0.39 100.00
ENCFF073SVL transverse colon (Tissue) 1.00 50.00 0.00 100.00
ENCFF081QYT esophagus squamous epithelium (Tissue) 16.00 76.19 0.03 100.00
ENCFF106XDA esophagus muscularis mucosa (Tissue) 52.00 75.36 0.23 100.00
ENCFF181JNF gastroesophageal sphincter (Tissue) 22.00 73.33 0.08 100.00
ENCFF192PKY upper lobe of left lung (Tissue) 4.00 66.67 0.02 100.00
ENCFF211GIU transverse colon (Tissue) 26.00 86.67 0.13 100.00
ENCFF261XRS stomach (Tissue) 130.00 74.29 0.63 100.00
ENCFF274FTM prostate gland (Tissue) 75.00 89.29 0.30 100.00
ENCFF295DXJ smooth muscle cell (In vitro differentiated cells) 3.00 100.00 0.00 100.00
ENCFF310THB vagina (Tissue) 19.00 76.00 0.08 100.00
ENCFF316MTC trophoblast cell (In vitro differentiated cells) 5.00 20.83 0.03 100.00
ENCFF338AVU gastroesophageal sphincter (Tissue) 8.00 88.89 0.02 100.00
ENCFF379KTQ stomach (Tissue) 79.00 77.45 0.36 100.00
ENCFF381DXM transverse colon (Tissue) 43.00 79.63 0.17 100.00
ENCFF476IAU esophagus squamous epithelium (Tissue) 11.00 78.57 0.04 100.00
ENCFF510IHL esophagus squamous epithelium (Tissue) 5.00 62.50 0.02 100.00
ENCFF583SZV stomach (Tissue) 76.00 81.72 0.33 100.00
ENCFF625OBY sigmoid colon (Tissue) 36.00 60.00 0.21 100.00
ENCFF631JZF sigmoid colon (Tissue) 6.00 100.00 0.03 100.00
ENCFF643IED upper lobe of left lung (Tissue) 4.00 66.67 0.03 100.00
ENCFF645FQS transverse colon (Tissue) 46.00 75.41 0.24 100.00
ENCFF655CDV sigmoid colon (Tissue) 43.00 63.24 0.16 100.00
ENCFF657CXK esophagus muscularis mucosa (Tissue) 36.00 80.00 0.15 100.00
ENCFF685KEG stomach (Tissue) 13.00 44.83 0.07 100.00
ENCFF694VGD upper lobe of left lung (Tissue) 8.00 72.73 0.05 100.00
ENCFF714LDG trophoblast cell (In vitro differentiated cells) 6.00 26.09 0.04 100.00
ENCFF720JFQ mesendoderm (In vitro differentiated cells) 5.00 55.56 0.05 100.00
ENCFF728EUS sigmoid colon (Tissue) 26.00 74.29 0.17 100.00
ENCFF744HOK gastroesophageal sphincter (Tissue) 7.00 43.75 0.02 100.00
ENCFF797VVQ esophagus muscularis mucosa (Tissue) 14.00 82.35 0.09 100.00
ENCFF800ZUT tibial nerve (Tissue) 5.00 100.00 0.04 100.00
ENCFF811DGS gastroesophageal sphincter (Tissue) 48.00 80.00 0.20 100.00
ENCFF853XSN Peyer's patch (Tissue) 1.00 50.00 0.00 100.00

RNA secondary structure