sncRNA detail

ENST00000685227.3_1036_1055_+

Derived from ENST00000685227.3 • Homo Sapiens

68 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
MIR124-1HG-216
Gene
MIR124-1HG (ENSG00000253230.12)
Precursor type
lncRNA
Sequence
TAAGGCACGCGGTGAATGCC
Start
Start: 1036
End
End: 1055
Length
Length: 20
Expression (sum)
837698.00
Expression fraction
88.64
Expression (Avg non-zero)
12319.09
Expression (max)
152878.00
Expression (CPM sum)
21.27
Expression (CPM avg non-zero)
28.63
Expression (CPM max)
312.90
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
MIR124-1HG-216
Transcript ID
ENST00000685227.3
Chromosome
chr8
Genomic start
9902941
Genomic end
9906214

Gene context

Gene name
MIR124-1HG
Gene ID
ENSG00000253230.12
Gene type
lncRNA

Expression table

Showing 68 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REE GM12878 (Cell line) 6.00 10.17 0.02 100.00
ENCFF001REL K562 (Cell line) 1.00 6.67 0.00 100.00
ENCFF001REQ K562 (Cell line) 1.00 4.55 0.00 100.00
ENCFF001RLS parietal lobe (Tissue) 69413.00 91.63 245.56 100.00
ENCFF001RLT temporal lobe (Tissue) 103081.00 86.86 171.10 100.00
ENCFF001RLU spinal cord (Tissue) 8002.00 91.86 27.18 100.00
ENCFF001RLV tongue (Tissue) 106.00 84.80 0.29 100.00
ENCFF001RLW occipital lobe (Tissue) 29476.00 85.93 95.52 100.00
ENCFF001RLX spinal cord (Tissue) 19382.00 91.74 35.54 100.00
ENCFF001RLY diencephalon (Tissue) 31665.00 86.27 90.34 100.00
ENCFF001RLZ heart (Tissue) 314.00 89.97 0.30 100.00
ENCFF001RMA skin of body (Tissue) 123.00 90.44 0.30 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 194.00 93.27 0.63 100.00
ENCFF511CAA neuronal stem cell (In vitro differentiated cells) 334.00 45.44 2.58 100.00
ENCFF001RMC temporal lobe (Tissue) 152878.00 88.97 312.90 100.00
ENCFF001RMD uterus (Tissue) 21.00 87.50 0.03 100.00
ENCFF001RME occipital lobe (Tissue) 54798.00 86.89 116.00 100.00
ENCFF001RMF metanephros (Tissue) 5.00 41.67 0.01 100.00
ENCFF001RMG parietal lobe (Tissue) 61567.00 90.89 261.69 100.00
ENCFF001RMH lung (Tissue) 4.00 40.00 0.01 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 48.00 92.31 0.21 100.00
ENCFF001RMJ skin of body (Tissue) 353.00 86.31 0.92 100.00
ENCFF001RMK heart (Tissue) 32.00 72.73 0.06 100.00
ENCFF001RML cerebellum (Tissue) 111973.00 92.20 207.11 100.00
ENCFF001RMM frontal cortex (Tissue) 68903.00 86.53 113.55 100.00
ENCFF001RMN uterus (Tissue) 22.00 78.57 0.04 100.00
ENCFF001RMO cerebellum (Tissue) 47392.00 91.77 91.50 100.00
ENCFF001RMP frontal cortex (Tissue) 48104.00 85.13 76.77 100.00
ENCFF001RMQ lung (Tissue) 5.00 62.50 0.01 100.00
ENCFF001RMR thyroid gland (Tissue) 21.00 70.00 0.05 100.00
ENCFF001RMS diencephalon (Tissue) 28073.00 84.96 58.21 100.00
ENCFF001RMT thyroid gland (Tissue) 122.00 92.42 0.16 100.00
ENCFF001RMU metanephros (Tissue) 15.00 65.22 0.03 100.00
ENCFF001RMV tongue (Tissue) 82.00 79.61 0.16 100.00
ENCFF001RTT urinary bladder (Tissue) 101.00 80.16 0.27 100.00
ENCFF001RTU liver (Tissue) 3.00 30.00 0.01 100.00
ENCFF004BLT GM23338 (Cell line) 96.00 51.34 0.12 100.00
ENCFF059WHB prostate gland (Tissue) 4.00 50.00 0.01 100.00
ENCFF073SVL transverse colon (Tissue) 1.00 16.67 0.00 100.00
ENCFF106XDA esophagus muscularis mucosa (Tissue) 1.00 50.00 0.00 100.00
ENCFF192PKY upper lobe of left lung (Tissue) 2.00 66.67 0.01 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 10.00 43.48 0.01 100.00
ENCFF211GIU transverse colon (Tissue) 3.00 100.00 0.01 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 1.00 16.67 0.00 100.00
ENCFF225QQQ mesenchymal stem cell (In vitro differentiated cells) 1.00 50.00 0.00 100.00
ENCFF261XRS stomach (Tissue) 5.00 50.00 0.02 100.00
ENCFF310THB vagina (Tissue) 3.00 75.00 0.01 100.00
ENCFF316MTC trophoblast cell (In vitro differentiated cells) 49.00 63.64 0.31 100.00
ENCFF381DXM transverse colon (Tissue) 14.00 73.68 0.05 100.00
ENCFF400GBK spleen (Tissue) 1.00 25.00 0.00 100.00
ENCFF450POH GM23338 (Cell line) 155.00 54.77 1.20 100.00
ENCFF476IAU esophagus squamous epithelium (Tissue) 1.00 25.00 0.00 100.00
ENCFF503PBD mesendoderm (In vitro differentiated cells) 203.00 62.85 1.92 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 3.00 30.00 0.00 100.00
ENCFF625OBY sigmoid colon (Tissue) 2.00 33.33 0.01 100.00
ENCFF631JZF sigmoid colon (Tissue) 2.00 100.00 0.01 100.00
ENCFF645FQS transverse colon (Tissue) 4.00 44.44 0.02 100.00
ENCFF655CDV sigmoid colon (Tissue) 2.00 66.67 0.01 100.00
ENCFF657CXK esophagus muscularis mucosa (Tissue) 1.00 100.00 0.00 100.00
ENCFF714LDG trophoblast cell (In vitro differentiated cells) 46.00 59.74 0.30 100.00
ENCFF720JFQ mesendoderm (In vitro differentiated cells) 241.00 59.36 2.21 100.00
ENCFF728EUS sigmoid colon (Tissue) 6.00 30.00 0.04 100.00
ENCFF744HOK gastroesophageal sphincter (Tissue) 4.00 100.00 0.01 100.00
ENCFF800ZUT tibial nerve (Tissue) 7.00 100.00 0.06 100.00
ENCFF853XSN Peyer's patch (Tissue) 2.00 28.57 0.01 100.00
ENCFF936FXF neuronal stem cell (In vitro differentiated cells) 202.00 39.07 1.47 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 2.00 22.22 0.00 100.00
ENCFF994BMY neural progenitor cell (In vitro differentiated cells) 4.00 22.22 0.00 100.00

RNA secondary structure