sncRNA detail

ENST00000660376.1_1_78_+

Derived from ENST00000660376.1 • Homo Sapiens

46 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
SNHG14-266
Gene
SNHG14 (ENSG00000224078.16)
Precursor type
lncRNA
Sequence
GTCAATGATGAGAACCTTATATTGTCCTGAAGAGAGGTGATGACTTAAAAATCATGCTCAATAGGATTACGCTGAGGC
Start
Start: 1
End
End: 78
Length
Length: 78
Expression (sum)
40086.00
Expression fraction
4.47
Expression (Avg non-zero)
871.43
Expression (max)
5801.00
Expression (CPM sum)
1.02
Expression (CPM avg non-zero)
1.80
Expression (CPM max)
9.63
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
SNHG14-266
Transcript ID
ENST00000660376.1
Chromosome
chr15
Genomic start
25236087
Genomic end
25420336

Gene context

Gene name
SNHG14
Gene ID
ENSG00000224078.16
Gene type
lncRNA

Expression table

Showing 46 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001RLS parietal lobe (Tissue) 2492.00 5.25 8.82 100.00
ENCFF001RLT temporal lobe (Tissue) 5801.00 3.51 9.63 100.00
ENCFF001RLU spinal cord (Tissue) 2455.00 5.77 8.34 100.00
ENCFF001RLV tongue (Tissue) 52.00 5.49 0.14 100.00
ENCFF001RLW occipital lobe (Tissue) 1679.00 9.09 5.44 100.00
ENCFF001RLX spinal cord (Tissue) 3564.00 6.11 6.54 100.00
ENCFF001RLY diencephalon (Tissue) 3671.00 4.41 10.47 100.00
ENCFF001RLZ heart (Tissue) 225.00 4.78 0.21 100.00
ENCFF001RMA skin of body (Tissue) 4.00 3.77 0.01 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 49.00 3.84 0.16 100.00
ENCFF001RMC temporal lobe (Tissue) 5081.00 5.98 10.40 100.00
ENCFF001RMD uterus (Tissue) 21.00 3.14 0.03 100.00
ENCFF001RME occipital lobe (Tissue) 1201.00 4.13 2.54 100.00
ENCFF001RMF metanephros (Tissue) 8.00 2.39 0.01 100.00
ENCFF001RMG parietal lobe (Tissue) 2010.00 8.53 8.54 100.00
ENCFF001RMH lung (Tissue) 66.00 5.56 0.15 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 36.00 4.49 0.16 100.00
ENCFF001RMJ skin of body (Tissue) 9.00 3.07 0.02 100.00
ENCFF001RMK heart (Tissue) 267.00 9.77 0.46 100.00
ENCFF001RML cerebellum (Tissue) 1487.00 3.04 2.75 100.00
ENCFF001RMM frontal cortex (Tissue) 1937.00 3.60 3.19 100.00
ENCFF001RMN uterus (Tissue) 30.00 5.23 0.06 100.00
ENCFF001RMO cerebellum (Tissue) 1285.00 4.99 2.48 100.00
ENCFF001RMP frontal cortex (Tissue) 1734.00 2.98 2.77 100.00
ENCFF001RMQ lung (Tissue) 119.00 4.31 0.18 100.00
ENCFF001RMR thyroid gland (Tissue) 37.00 8.62 0.08 100.00
ENCFF001RMS diencephalon (Tissue) 3538.00 3.54 7.34 100.00
ENCFF001RMT thyroid gland (Tissue) 41.00 4.22 0.05 100.00
ENCFF001RMU metanephros (Tissue) 15.00 8.11 0.03 100.00
ENCFF001RMV tongue (Tissue) 84.00 3.62 0.16 100.00
ENCFF001RTT urinary bladder (Tissue) 18.00 3.09 0.05 100.00
ENCFF001RTU liver (Tissue) 759.00 4.09 2.26 100.00
ENCFF073SVL transverse colon (Tissue) 4.00 4.12 0.02 100.00
ENCFF076JME ovary (Tissue) 4.00 4.49 0.02 100.00
ENCFF081QYT esophagus squamous epithelium (Tissue) 4.00 3.08 0.01 100.00
ENCFF106XDA esophagus muscularis mucosa (Tissue) 7.00 5.26 0.03 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 35.00 1.32 0.03 100.00
ENCFF274FTM prostate gland (Tissue) 1.00 0.71 0.00 100.00
ENCFF295DXJ smooth muscle cell (In vitro differentiated cells) 54.00 3.47 0.06 100.00
ENCFF516CUT adrenal gland (Tissue) 1.00 0.71 0.01 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 104.00 3.66 0.09 100.00
ENCFF657CXK esophagus muscularis mucosa (Tissue) 3.00 1.45 0.01 100.00
ENCFF686BEE adrenal gland (Tissue) 10.00 9.52 0.07 100.00
ENCFF744HOK gastroesophageal sphincter (Tissue) 2.00 0.36 0.01 100.00
ENCFF811DGS gastroesophageal sphincter (Tissue) 4.00 1.17 0.02 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 78.00 3.28 0.09 100.00

RNA secondary structure