sncRNA detail

tRNA-transcript-chr17-39154491_1_13_+

Derived from TRNA-TRANSCRIPT-CHR17-39154491 • Homo Sapiens

66 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
TRNA-TRANSCRIPT-CHR17-39154491
Gene
tRNA-gene-chr17-39154491 (TRNA-GENE-CHR17-39154491)
Precursor type
Cys tRNA
Sequence
GGGGGTATAGCTC
Start
Start: 1
End
End: 13
Length
Length: 13
Expression (sum)
40080.00
Expression fraction
11.33
Expression (Avg non-zero)
607.27
Expression (max)
6428.00
Expression (CPM sum)
1.03
Expression (CPM avg non-zero)
1.40
Expression (CPM max)
16.58
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
TRNA-TRANSCRIPT-CHR17-39154491
Transcript ID
TRNA-TRANSCRIPT-CHR17-39154491
Chromosome
chr17
Genomic start
39154491
Genomic end
39154562

Gene context

Gene name
tRNA-gene-chr17-39154491
Gene ID
TRNA-GENE-CHR17-39154491
Gene type
Cys_tRNA

Expression table

Showing 66 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REE GM12878 (Cell line) 6428.00 34.78 16.58 100.00
ENCFF001REL K562 (Cell line) 3128.00 33.88 5.81 100.00
ENCFF001REQ K562 (Cell line) 5715.00 34.25 14.50 100.00
ENCFF001RER GM12878 (Cell line) 3537.00 31.69 7.31 100.00
ENCFF001RLS parietal lobe (Tissue) 11.00 0.27 0.04 100.00
ENCFF001RLT temporal lobe (Tissue) 53.00 1.60 0.09 100.00
ENCFF001RLU spinal cord (Tissue) 50.00 1.53 0.17 100.00
ENCFF001RLV tongue (Tissue) 129.00 1.01 0.35 100.00
ENCFF001RLW occipital lobe (Tissue) 2.00 0.71 0.01 100.00
ENCFF001RLX spinal cord (Tissue) 151.00 0.62 0.28 100.00
ENCFF001RLY diencephalon (Tissue) 17.00 0.65 0.05 100.00
ENCFF001RLZ heart (Tissue) 426.00 12.66 0.40 100.00
ENCFF001RMA skin of body (Tissue) 307.00 3.93 0.76 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 206.00 2.40 0.66 100.00
ENCFF511CAA neuronal stem cell (In vitro differentiated cells) 982.00 51.07 7.59 100.00
ENCFF001RMC temporal lobe (Tissue) 63.00 0.35 0.13 100.00
ENCFF001RMD uterus (Tissue) 90.00 1.22 0.15 100.00
ENCFF001RME occipital lobe (Tissue) 7.00 1.17 0.01 100.00
ENCFF001RMF metanephros (Tissue) 134.00 21.65 0.25 100.00
ENCFF001RMG parietal lobe (Tissue) 8.00 2.66 0.03 100.00
ENCFF001RMH lung (Tissue) 32.00 0.91 0.07 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 88.00 3.45 0.38 100.00
ENCFF001RMJ skin of body (Tissue) 99.00 0.55 0.26 100.00
ENCFF001RMK heart (Tissue) 280.00 0.65 0.49 100.00
ENCFF001RML cerebellum (Tissue) 77.00 2.24 0.14 100.00
ENCFF001RMM frontal cortex (Tissue) 14.00 2.28 0.02 100.00
ENCFF001RMN uterus (Tissue) 102.00 3.60 0.19 100.00
ENCFF001RMO cerebellum (Tissue) 141.00 2.41 0.27 100.00
ENCFF001RMP frontal cortex (Tissue) 20.00 1.53 0.03 100.00
ENCFF001RMQ lung (Tissue) 77.00 13.12 0.12 100.00
ENCFF001RMR thyroid gland (Tissue) 192.00 5.34 0.43 100.00
ENCFF001RMS diencephalon (Tissue) 23.00 2.32 0.05 100.00
ENCFF001RMT thyroid gland (Tissue) 264.00 2.91 0.35 100.00
ENCFF001RMU metanephros (Tissue) 49.00 0.73 0.10 100.00
ENCFF001RMV tongue (Tissue) 217.00 11.87 0.42 100.00
ENCFF001RTT urinary bladder (Tissue) 181.00 2.55 0.49 100.00
ENCFF001RTU liver (Tissue) 181.00 7.26 0.54 100.00
ENCFF004BLT GM23338 (Cell line) 117.00 11.99 0.14 100.00
ENCFF004YAN Karpas-422 (Cell line) 25.00 2.32 0.17 100.00
ENCFF023EVA A375 (Cell line) 5.00 4.55 0.03 100.00
ENCFF062TYF GM23248 (Cell line) 7.00 11.29 0.30 100.00
ENCFF192PKY upper lobe of left lung (Tissue) 1.00 0.08 0.01 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 112.00 7.21 0.09 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 288.00 6.44 0.21 100.00
ENCFF225QQQ mesenchymal stem cell (In vitro differentiated cells) 977.00 45.61 4.41 100.00
ENCFF226BCZ Karpas-422 (Cell line) 18.00 2.23 0.12 100.00
ENCFF276PUU mesenchymal stem cell (In vitro differentiated cells) 983.00 40.39 4.70 100.00
ENCFF295DXJ smooth muscle cell (In vitro differentiated cells) 341.00 12.50 0.40 100.00
ENCFF299ETH OCI-LY7 (Cell line) 6.00 2.14 0.06 100.00
ENCFF316MTC trophoblast cell (In vitro differentiated cells) 1508.00 18.76 9.68 100.00
ENCFF450POH GM23338 (Cell line) 101.00 8.58 0.78 100.00
ENCFF495VAK Peyer's patch (Tissue) 1.00 0.24 0.00 100.00
ENCFF503PBD mesendoderm (In vitro differentiated cells) 4472.00 59.46 42.40 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 206.00 7.64 0.17 100.00
ENCFF521RDG OCI-LY7 (Cell line) 4.00 1.28 0.04 100.00
ENCFF540WGH HT-29 (Cell line) 5.00 3.40 0.06 100.00
ENCFF590YKZ GM23248 (Cell line) 2.00 3.45 0.04 100.00
ENCFF686BEE adrenal gland (Tissue) 1.00 0.28 0.01 100.00
ENCFF714LDG trophoblast cell (In vitro differentiated cells) 1675.00 23.09 11.10 100.00
ENCFF720JFQ mesendoderm (In vitro differentiated cells) 4166.00 59.28 38.27 100.00
ENCFF834CUR HT-29 (Cell line) 11.00 7.28 0.15 100.00
ENCFF853XSN Peyer's patch (Tissue) 1.00 0.06 0.00 100.00
ENCFF936FXF neuronal stem cell (In vitro differentiated cells) 1440.00 47.18 10.49 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 60.00 4.56 0.07 100.00
ENCFF993BFO body of pancreas (Tissue) 1.00 0.09 0.01 100.00
ENCFF994BMY neural progenitor cell (In vitro differentiated cells) 65.00 4.33 0.04 100.00

RNA secondary structure