sncRNA detail

ENST00000597420.2_241_263_+

Derived from ENST00000597420.2 • Homo Sapiens

53 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
ENST00000597420
Gene
ENSG00000269564 (ENSG00000269564.2)
Precursor type
lncRNA
Sequence
GAAGTGCTTCGATTTTGGGGTGT
Start
Start: 241
End
End: 263
Length
Length: 23
Expression (sum)
219974.00
Expression fraction
87.59
Expression (Avg non-zero)
4150.45
Expression (max)
130862.00
Expression (CPM sum)
5.66
Expression (CPM avg non-zero)
8.86
Expression (CPM max)
1011.88
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
ENST00000597420
Transcript ID
ENST00000597420.2
Chromosome
chr19
Genomic start
53786928
Genomic end
53789168

Gene context

Gene name
ENSG00000269564
Gene ID
ENSG00000269564.2
Gene type
lncRNA

Expression table

Showing 53 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REL K562 (Cell line) 257.00 81.85 0.48 100.00
ENCFF001REQ K562 (Cell line) 373.00 83.82 0.95 100.00
ENCFF001RLS parietal lobe (Tissue) 2.00 66.67 0.01 100.00
ENCFF001RLU spinal cord (Tissue) 3.00 100.00 0.01 100.00
ENCFF001RLV tongue (Tissue) 17.00 62.96 0.05 100.00
ENCFF001RLX spinal cord (Tissue) 14.00 63.64 0.03 100.00
ENCFF001RLY diencephalon (Tissue) 2.00 40.00 0.01 100.00
ENCFF001RLZ heart (Tissue) 1489.00 84.70 1.41 100.00
ENCFF001RMA skin of body (Tissue) 21.00 72.41 0.05 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 334.00 90.27 1.08 100.00
ENCFF511CAA neuronal stem cell (In vitro differentiated cells) 160.00 68.67 1.24 100.00
ENCFF001RMC temporal lobe (Tissue) 1.00 50.00 0.00 100.00
ENCFF001RMD uterus (Tissue) 142.00 63.96 0.23 100.00
ENCFF001RMF metanephros (Tissue) 16.00 76.19 0.03 100.00
ENCFF001RMG parietal lobe (Tissue) 1.00 100.00 0.00 100.00
ENCFF001RMH lung (Tissue) 1.00 33.33 0.00 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 89.00 83.18 0.39 100.00
ENCFF001RMJ skin of body (Tissue) 29.00 69.05 0.08 100.00
ENCFF001RMK heart (Tissue) 679.00 84.45 1.18 100.00
ENCFF001RML cerebellum (Tissue) 130.00 84.97 0.24 100.00
ENCFF001RMN uterus (Tissue) 35.00 60.34 0.07 100.00
ENCFF001RMO cerebellum (Tissue) 47.00 82.46 0.09 100.00
ENCFF001RMQ lung (Tissue) 4.00 57.14 0.01 100.00
ENCFF001RMR thyroid gland (Tissue) 12.00 44.44 0.03 100.00
ENCFF001RMS diencephalon (Tissue) 14.00 66.67 0.03 100.00
ENCFF001RMT thyroid gland (Tissue) 97.00 78.23 0.13 100.00
ENCFF001RMU metanephros (Tissue) 7.00 43.75 0.01 100.00
ENCFF001RMV tongue (Tissue) 37.00 63.79 0.07 100.00
ENCFF001RTT urinary bladder (Tissue) 21.00 52.50 0.06 100.00
ENCFF001RTU liver (Tissue) 18.00 62.07 0.05 100.00
ENCFF004BLT GM23338 (Cell line) 50206.00 88.38 60.25 100.00
ENCFF106XDA esophagus muscularis mucosa (Tissue) 1.00 50.00 0.00 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 367.00 79.61 0.30 100.00
ENCFF195CBI testis (Tissue) 11.00 84.62 0.05 100.00
ENCFF211GIU transverse colon (Tissue) 1.00 100.00 0.00 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 190.00 71.70 0.14 100.00
ENCFF225QQQ mesenchymal stem cell (In vitro differentiated cells) 5.00 83.33 0.02 100.00
ENCFF276PUU mesenchymal stem cell (In vitro differentiated cells) 5.00 83.33 0.02 100.00
ENCFF295DXJ smooth muscle cell (In vitro differentiated cells) 118.00 73.29 0.14 100.00
ENCFF316MTC trophoblast cell (In vitro differentiated cells) 7498.00 86.38 48.14 100.00
ENCFF450POH GM23338 (Cell line) 130862.00 89.12 1011.88 100.00
ENCFF478BJL testis (Tissue) 28.00 80.00 0.18 100.00
ENCFF503PBD mesendoderm (In vitro differentiated cells) 9059.00 79.43 85.89 100.00
ENCFF510IHL esophagus squamous epithelium (Tissue) 1.00 100.00 0.00 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 188.00 78.33 0.16 100.00
ENCFF574WUG right lobe of liver (Tissue) 3.00 50.00 0.03 100.00
ENCFF657CXK esophagus muscularis mucosa (Tissue) 1.00 100.00 0.00 100.00
ENCFF714LDG trophoblast cell (In vitro differentiated cells) 7389.00 85.92 48.95 100.00
ENCFF720JFQ mesendoderm (In vitro differentiated cells) 9612.00 80.03 88.29 100.00
ENCFF908XAD omental fat pad (Tissue) 2.00 100.00 0.00 100.00
ENCFF936FXF neuronal stem cell (In vitro differentiated cells) 150.00 66.08 1.09 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 43.00 71.67 0.05 100.00
ENCFF994BMY neural progenitor cell (In vitro differentiated cells) 182.00 72.22 0.11 100.00

RNA secondary structure