sncRNA detail

ENST00000590797.5_2254_2275_+

Derived from ENST00000590797.5 • Homo Sapiens

39 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
MIR122HG-201
Gene
MIR122HG (ENSG00000267391.8)
Precursor type
lncRNA
Sequence
TGGAGTGTGACAATGGTGTTTG
Start
Start: 2254
End
End: 2275
Length
Length: 22
Expression (sum)
53424.00
Expression fraction
42.56
Expression (Avg non-zero)
1369.85
Expression (max)
26307.00
Expression (CPM sum)
1.38
Expression (CPM avg non-zero)
3.28
Expression (CPM max)
78.42
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
MIR122HG-201
Transcript ID
ENST00000590797.5
Chromosome
chr18
Genomic start
58445864
Genomic end
58453766

Gene context

Gene name
MIR122HG
Gene ID
ENSG00000267391.8
Gene type
lncRNA

Expression table

Showing 39 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REL K562 (Cell line) 1.00 10.00 0.00 100.00
ENCFF001RLS parietal lobe (Tissue) 1.00 11.11 0.00 100.00
ENCFF001RLT temporal lobe (Tissue) 1.00 3.33 0.00 100.00
ENCFF001RLU spinal cord (Tissue) 11.00 64.71 0.04 100.00
ENCFF001RLV tongue (Tissue) 3.00 42.86 0.01 100.00
ENCFF001RLX spinal cord (Tissue) 8.00 38.10 0.01 100.00
ENCFF001RLZ heart (Tissue) 31.00 18.24 0.03 100.00
ENCFF001RMA skin of body (Tissue) 30.00 49.18 0.07 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 25.00 47.17 0.08 100.00
ENCFF001RMC temporal lobe (Tissue) 2.00 11.76 0.00 100.00
ENCFF001RMD uterus (Tissue) 53.00 35.33 0.09 100.00
ENCFF001RMG parietal lobe (Tissue) 1.00 14.29 0.00 100.00
ENCFF001RMH lung (Tissue) 5.00 55.56 0.01 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 6.00 25.00 0.03 100.00
ENCFF001RMJ skin of body (Tissue) 12.00 40.00 0.03 100.00
ENCFF001RMK heart (Tissue) 103.00 32.29 0.18 100.00
ENCFF001RML cerebellum (Tissue) 3.00 50.00 0.01 100.00
ENCFF001RMM frontal cortex (Tissue) 1.00 7.14 0.00 100.00
ENCFF001RMR thyroid gland (Tissue) 4.00 21.05 0.01 100.00
ENCFF001RMS diencephalon (Tissue) 2.00 20.00 0.00 100.00
ENCFF001RMT thyroid gland (Tissue) 1.00 1.75 0.00 100.00
ENCFF001RMU metanephros (Tissue) 36.00 52.17 0.08 100.00
ENCFF001RMV tongue (Tissue) 2.00 16.67 0.00 100.00
ENCFF001RTT urinary bladder (Tissue) 18.00 52.94 0.05 100.00
ENCFF001RTU liver (Tissue) 26307.00 48.74 78.42 100.00
ENCFF158HXL right lobe of liver (Tissue) 7122.00 30.76 61.00 100.00
ENCFF261XRS stomach (Tissue) 1.00 50.00 0.00 100.00
ENCFF429ILE esophagus squamous epithelium (Tissue) 2.00 33.33 0.01 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 7011.00 50.72 5.87 100.00
ENCFF574WUG right lobe of liver (Tissue) 8159.00 33.42 68.05 100.00
ENCFF583SZV stomach (Tissue) 4.00 40.00 0.02 100.00
ENCFF643IED upper lobe of left lung (Tissue) 2.00 33.33 0.01 100.00
ENCFF657CXK esophagus muscularis mucosa (Tissue) 2.00 28.57 0.01 100.00
ENCFF682YQJ spleen (Tissue) 5.00 20.83 0.02 100.00
ENCFF686BEE adrenal gland (Tissue) 4.00 23.53 0.03 100.00
ENCFF744HOK gastroesophageal sphincter (Tissue) 13.00 25.49 0.04 100.00
ENCFF768XBE upper lobe of left lung (Tissue) 4.00 40.00 0.03 100.00
ENCFF811DGS gastroesophageal sphincter (Tissue) 1.00 10.00 0.00 100.00
ENCFF964DUY hepatocyte (In vitro differentiated cells) 4427.00 51.50 4.94 100.00

RNA secondary structure