sncRNA detail

ENST00000401172.1_46_67_+

Derived from ENST00000401172.1 • Homo Sapiens

42 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
MIR208B-201
Gene
MIR208B (ENSG00000215991.1)
Precursor type
miRNA
Sequence
ATAAGACGAACAAAAGGTTTGT
Start
Start: 46
End
End: 67
Length
Length: 22
Expression (sum)
288163.00
Expression fraction
93.01
Expression (Avg non-zero)
6861.02
Expression (max)
125579.00
Expression (CPM sum)
7.38
Expression (CPM avg non-zero)
15.46
Expression (CPM max)
217.93
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
MIR208B-201
Transcript ID
ENST00000401172.1
Chromosome
chr14
Genomic start
23417987
Genomic end
23418063

Gene context

Gene name
MIR208B
Gene ID
ENSG00000215991.1
Gene type
miRNA

Expression table

Showing 42 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REE GM12878 (Cell line) 50.00 92.59 0.13 100.00
ENCFF001REL K562 (Cell line) 1.00 100.00 0.00 100.00
ENCFF001RER GM12878 (Cell line) 19.00 95.00 0.04 100.00
ENCFF001RLS parietal lobe (Tissue) 12.00 92.31 0.04 100.00
ENCFF001RLT temporal lobe (Tissue) 22.00 84.62 0.04 100.00
ENCFF001RLU spinal cord (Tissue) 16.00 100.00 0.05 100.00
ENCFF001RLV tongue (Tissue) 564.00 92.76 1.53 100.00
ENCFF001RLW occipital lobe (Tissue) 12.00 85.71 0.04 100.00
ENCFF001RLX spinal cord (Tissue) 39.00 88.64 0.07 100.00
ENCFF001RLY diencephalon (Tissue) 33.00 82.50 0.09 100.00
ENCFF001RLZ heart (Tissue) 123582.00 92.48 116.75 100.00
ENCFF001RMA skin of body (Tissue) 63.00 85.14 0.16 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 4311.00 93.35 13.91 100.00
ENCFF001RMC temporal lobe (Tissue) 20.00 90.91 0.04 100.00
ENCFF001RMD uterus (Tissue) 1.00 33.33 0.00 100.00
ENCFF001RME occipital lobe (Tissue) 6.00 100.00 0.01 100.00
ENCFF001RMF metanephros (Tissue) 6.00 100.00 0.01 100.00
ENCFF001RMG parietal lobe (Tissue) 18.00 81.82 0.08 100.00
ENCFF001RMH lung (Tissue) 2.00 100.00 0.00 100.00
ENCFF001RMI skeletal muscle tissue (Tissue) 2101.00 93.09 9.11 100.00
ENCFF001RMJ skin of body (Tissue) 367.00 91.98 0.95 100.00
ENCFF001RMK heart (Tissue) 125579.00 93.38 217.93 100.00
ENCFF001RML cerebellum (Tissue) 203.00 88.26 0.38 100.00
ENCFF001RMM frontal cortex (Tissue) 15.00 78.95 0.02 100.00
ENCFF001RMO cerebellum (Tissue) 275.00 93.22 0.53 100.00
ENCFF001RMP frontal cortex (Tissue) 11.00 68.75 0.02 100.00
ENCFF001RMQ lung (Tissue) 5.00 100.00 0.01 100.00
ENCFF001RMR thyroid gland (Tissue) 69.00 85.19 0.15 100.00
ENCFF001RMS diencephalon (Tissue) 51.00 85.00 0.11 100.00
ENCFF001RMT thyroid gland (Tissue) 28424.00 93.82 37.49 100.00
ENCFF001RMU metanephros (Tissue) 148.00 94.27 0.31 100.00
ENCFF001RMV tongue (Tissue) 1799.00 92.64 3.51 100.00
ENCFF001RTT urinary bladder (Tissue) 319.00 94.10 0.86 100.00
ENCFF001RTU liver (Tissue) 2.00 100.00 0.01 100.00
ENCFF004YAN Karpas-422 (Cell line) 2.00 100.00 0.01 100.00
ENCFF274FTM prostate gland (Tissue) 2.00 100.00 0.01 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 5.00 100.00 0.00 100.00
ENCFF540WGH HT-29 (Cell line) 1.00 100.00 0.01 100.00
ENCFF583SZV stomach (Tissue) 4.00 100.00 0.02 100.00
ENCFF645FQS transverse colon (Tissue) 1.00 100.00 0.01 100.00
ENCFF714LDG trophoblast cell (In vitro differentiated cells) 1.00 100.00 0.01 100.00
ENCFF936FXF neuronal stem cell (In vitro differentiated cells) 2.00 100.00 0.01 100.00

RNA secondary structure