sncRNA detail

ENST00000661688.1_965_986_+

Derived from ENST00000661688.1 • Homo Sapiens

51 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
MIR9-2HG-225
Gene
MIR9-2HG (ENSG00000245526.14)
Precursor type
lncRNA
Sequence
ATAAAGCTAGATAACCGAAAGT
Start
Start: 965
End
End: 986
Length
Length: 22
Expression (sum)
54449.00
Expression fraction
0.54
Expression (Avg non-zero)
1067.63
Expression (max)
6088.00
Expression (CPM sum)
1.38
Expression (CPM avg non-zero)
2.43
Expression (CPM max)
11.26
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
MIR9-2HG-225
Transcript ID
ENST00000661688.1
Chromosome
chr5
Genomic start
88665383
Genomic end
88672972

Gene context

Gene name
MIR9-2HG
Gene ID
ENSG00000245526.14
Gene type
lncRNA

Expression table

Showing 51 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REE GM12878 (Cell line) 92.00 2.38 0.24 100.00
ENCFF001REL K562 (Cell line) 12.00 1.40 0.02 100.00
ENCFF001REQ K562 (Cell line) 26.00 1.49 0.07 100.00
ENCFF001RER GM12878 (Cell line) 47.00 2.22 0.10 100.00
ENCFF001RLS parietal lobe (Tissue) 2276.00 0.44 8.05 100.00
ENCFF001RLT temporal lobe (Tissue) 2522.00 0.17 4.19 100.00
ENCFF001RLU spinal cord (Tissue) 1630.00 0.84 5.54 100.00
ENCFF001RLV tongue (Tissue) 9.00 0.64 0.02 100.00
ENCFF001RLW occipital lobe (Tissue) 2418.00 0.49 7.84 100.00
ENCFF001RLX spinal cord (Tissue) 4759.00 0.85 8.73 100.00
ENCFF001RLY diencephalon (Tissue) 4863.00 1.39 13.87 100.00
ENCFF001RLZ heart (Tissue) 63.00 1.37 0.06 100.00
ENCFF001RMA skin of body (Tissue) 7.00 0.73 0.02 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 22.00 1.48 0.07 100.00
ENCFF511CAA neuronal stem cell (In vitro differentiated cells) 5.00 1.90 0.04 100.00
ENCFF001RMC temporal lobe (Tissue) 4515.00 0.29 9.24 100.00
ENCFF001RMD uterus (Tissue) 8.00 0.29 0.01 100.00
ENCFF001RME occipital lobe (Tissue) 2175.00 0.27 4.60 100.00
ENCFF001RMF metanephros (Tissue) 3.00 0.28 0.01 100.00
ENCFF001RMG parietal lobe (Tissue) 2752.00 0.53 11.70 100.00
ENCFF001RMH lung (Tissue) 3.00 0.96 0.01 100.00
ENCFF001RMJ skin of body (Tissue) 35.00 0.83 0.09 100.00
ENCFF001RMK heart (Tissue) 13.00 0.88 0.02 100.00
ENCFF001RML cerebellum (Tissue) 6088.00 0.59 11.26 100.00
ENCFF001RMM frontal cortex (Tissue) 3609.00 0.57 5.95 100.00
ENCFF001RMO cerebellum (Tissue) 5375.00 0.86 10.38 100.00
ENCFF001RMP frontal cortex (Tissue) 2490.00 0.37 3.97 100.00
ENCFF001RMQ lung (Tissue) 3.00 1.45 0.00 100.00
ENCFF001RMR thyroid gland (Tissue) 8.00 0.48 0.02 100.00
ENCFF001RMS diencephalon (Tissue) 3805.00 0.87 7.89 100.00
ENCFF001RMT thyroid gland (Tissue) 25.00 0.86 0.03 100.00
ENCFF001RMU metanephros (Tissue) 6.00 0.47 0.01 100.00
ENCFF001RMV tongue (Tissue) 14.00 1.09 0.03 100.00
ENCFF001RTT urinary bladder (Tissue) 9.00 0.53 0.02 100.00
ENCFF001RTU liver (Tissue) 1.00 0.35 0.00 100.00
ENCFF004YAN Karpas-422 (Cell line) 1.00 0.25 0.01 100.00
ENCFF059WHB prostate gland (Tissue) 1.00 0.38 0.00 100.00
ENCFF073SVL transverse colon (Tissue) 3.00 4.11 0.01 100.00
ENCFF193XIP neural progenitor cell (In vitro differentiated cells) 2.00 1.49 0.00 100.00
ENCFF222USQ smooth muscle cell (In vitro differentiated cells) 12.00 1.87 0.01 100.00
ENCFF276PUU mesenchymal stem cell (In vitro differentiated cells) 1.00 1.28 0.00 100.00
ENCFF316MTC trophoblast cell (In vitro differentiated cells) 1827.00 4.14 11.73 100.00
ENCFF450POH GM23338 (Cell line) 3.00 0.49 0.02 100.00
ENCFF503PBD mesendoderm (In vitro differentiated cells) 406.00 3.33 3.85 100.00
ENCFF516CUT adrenal gland (Tissue) 4.00 0.62 0.02 100.00
ENCFF518LYU hepatocyte (In vitro differentiated cells) 1.00 0.25 0.00 100.00
ENCFF682YQJ spleen (Tissue) 2.00 1.94 0.01 100.00
ENCFF714LDG trophoblast cell (In vitro differentiated cells) 1949.00 4.35 12.91 100.00
ENCFF720JFQ mesendoderm (In vitro differentiated cells) 538.00 4.08 4.94 100.00
ENCFF728EUS sigmoid colon (Tissue) 4.00 0.67 0.03 100.00
ENCFF936FXF neuronal stem cell (In vitro differentiated cells) 7.00 2.65 0.05 100.00

RNA secondary structure