sncRNA detail

ENST00000762395.1_307_324_+

Derived from ENST00000762395.1 • Homo Sapiens

42 libraries

sncRNA snapshot

Organism
Homo Sapiens
Precursor
LINC02806-241
Gene
LINC02806 (ENSG00000238107.2)
Precursor type
lncRNA
Sequence
CGGTTTAGCCTGTGGCTC
Start
Start: 307
End
End: 324
Length
Length: 18
Expression (sum)
327843.00
Expression fraction
2.40
Expression (Avg non-zero)
7805.79
Expression (max)
70804.00
Expression (CPM sum)
8.29
Expression (CPM avg non-zero)
21.74
Expression (CPM max)
650.35
Prominence
100.0

Genomic Context

Precursor and gene context

Precursor overview

Transcript name
LINC02806-241
Transcript ID
ENST00000762395.1
Chromosome
chr1
Genomic start
148281041
Genomic end
148289573

Gene context

Gene name
LINC02806
Gene ID
ENSG00000238107.2
Gene type
lncRNA

Expression table

Showing 42 linked libraries
Library Biosample Expression Expression fraction Expression (CPM) Prominence
ENCFF001REE GM12878 (Cell line) 46386.00 35.30 119.62 100.00
ENCFF001REL K562 (Cell line) 3847.00 7.22 7.15 100.00
ENCFF001REQ K562 (Cell line) 18672.00 24.12 47.39 100.00
ENCFF001RER GM12878 (Cell line) 32337.00 38.99 66.79 100.00
ENCFF001RLT temporal lobe (Tissue) 5.00 0.02 0.01 100.00
ENCFF001RLZ heart (Tissue) 4.00 0.03 0.00 100.00
ENCFF001RMA skin of body (Tissue) 13.00 0.02 0.03 100.00
ENCFF001RMB skeletal muscle tissue (Tissue) 3.00 0.01 0.01 100.00
ENCFF511CAA neuronal stem cell (In vitro differentiated cells) 1686.00 6.94 13.03 100.00
ENCFF001RME occipital lobe (Tissue) 1.00 0.02 0.00 100.00
ENCFF001RMF metanephros (Tissue) 3.00 0.05 0.01 100.00
ENCFF001RMH lung (Tissue) 1.00 0.00 0.00 100.00
ENCFF001RMJ skin of body (Tissue) 8.00 0.01 0.02 100.00
ENCFF001RMK heart (Tissue) 3.00 0.00 0.01 100.00
ENCFF001RML cerebellum (Tissue) 3.00 0.01 0.01 100.00
ENCFF001RMQ lung (Tissue) 7.00 0.08 0.01 100.00
ENCFF001RMT thyroid gland (Tissue) 7.00 0.02 0.01 100.00
ENCFF001RMV tongue (Tissue) 42.00 0.25 0.08 100.00
ENCFF001RTT urinary bladder (Tissue) 9.00 0.03 0.02 100.00
ENCFF001RTU liver (Tissue) 5.00 0.03 0.01 100.00
ENCFF004BLT GM23338 (Cell line) 3.00 0.00 0.00 100.00
ENCFF004YAN Karpas-422 (Cell line) 1.00 0.00 0.01 100.00
ENCFF015UJX spleen (Tissue) 17.00 0.05 0.10 100.00
ENCFF059WHB prostate gland (Tissue) 1.00 0.00 0.00 100.00
ENCFF081QYT esophagus squamous epithelium (Tissue) 809.00 8.67 1.48 100.00
ENCFF225QQQ mesenchymal stem cell (In vitro differentiated cells) 21958.00 34.42 99.13 100.00
ENCFF226BCZ Karpas-422 (Cell line) 1.00 0.00 0.01 100.00
ENCFF276PUU mesenchymal stem cell (In vitro differentiated cells) 21411.00 28.05 102.45 100.00
ENCFF316MTC trophoblast cell (In vitro differentiated cells) 22932.00 26.63 147.22 100.00
ENCFF338AVU gastroesophageal sphincter (Tissue) 30.00 0.08 0.09 100.00
ENCFF450POH GM23338 (Cell line) 6.00 0.00 0.05 100.00
ENCFF503PBD mesendoderm (In vitro differentiated cells) 61114.00 48.53 579.44 100.00
ENCFF510IHL esophagus squamous epithelium (Tissue) 2.00 0.00 0.01 100.00
ENCFF625OBY sigmoid colon (Tissue) 14.00 0.08 0.08 100.00
ENCFF645FQS transverse colon (Tissue) 28.00 0.01 0.15 100.00
ENCFF685KEG stomach (Tissue) 102.00 0.28 0.58 100.00
ENCFF714LDG trophoblast cell (In vitro differentiated cells) 23607.00 30.32 156.38 100.00
ENCFF720JFQ mesendoderm (In vitro differentiated cells) 70804.00 51.72 650.35 100.00
ENCFF768XBE upper lobe of left lung (Tissue) 87.00 0.11 0.63 100.00
ENCFF797VVQ esophagus muscularis mucosa (Tissue) 49.00 0.30 0.33 100.00
ENCFF908XAD omental fat pad (Tissue) 42.00 0.00 0.10 100.00
ENCFF936FXF neuronal stem cell (In vitro differentiated cells) 1783.00 5.79 12.99 100.00

RNA secondary structure