ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 99.00 0.00 0.08 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 959.00 0.03 0.79 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 1350.00 0.04 1.11 69.02 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 1513.00 0.04 1.25 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 93444.00 2.70 77.07 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 37891.00 1.09 31.25 99.76 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 340871.00 9.83 281.14 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 47383.00 1.37 39.08 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 506454.00 14.61 417.70 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 1.00 0.00 0.00 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 3458.00 0.10 2.85 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 40.00 1.44 0.03 100.0 FTX-219 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 2220.00 80.03 1.83 96.31 FTX-219 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 66.00 0.15 0.05 6.24 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 17020.00 39.32 14.04 98.22 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 4348.00 10.04 3.59 76.72 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 992.00 2.29 0.82 93.76 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 3184.00 7.36 2.63 77.23 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 12289.00 28.39 10.14 100.0 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 1155.00 2.67 0.95 100.0 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 665.00 1.54 0.55 100.0 CTC1-214 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 6880.00 8.85 5.67 69.78 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 2690.00 3.46 2.22 98.9 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 152.00 0.20 0.13 100.0 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 2349.00 3.02 1.94 65.91 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)