Precursor detail

ENST00000651323.1

Linked gene CTC1 • Homo Sapiens

8 sncRNAs

Precursor snapshot

Transcript name: CTC1-214
Transcript ID: ENST00000651323.1
Precursor type: protein coding

Chromosome: chr17
Genomic start: 8224815
Genomic end: 8248056
Strand: Not available

Precursor Annotation

Gene and transcript context

Gene context

Gene name: CTC1
Gene ID: ENSG00000178971.17
Gene type: protein_coding

Transcript metrics

Total sncRNAs: 8
Transcript length: 23242

Expression table for sncRNAs derived from this precursor

Showing 1–8 of 8 results |

sncRNA Name	Position in precursor	Expression (sum)	Expression fraction	Expression (CPM sum)	Prominence	Biosamples
ENST00000651323.1_5163_5174_+	5163–5174	849596.00	26.22	21.53	77.21	GM12878 (Cell line) K562 (Cell line) parietal lobe (Tissue) temporal lobe (Tissue) spinal cord (Tissue) tongue (Tissue) occipital lobe (Tissue) diencephalon (Tissue) heart (Tissue) skin of body (Tissue) skeletal muscle tissue (Tissue) uterus (Tissue) metanephros (Tissue) lung (Tissue) cerebellum (Tissue) frontal cortex (Tissue) thyroid gland (Tissue) urinary bladder (Tissue) liver (Tissue) GM23338 (Cell line) Karpas-422 (Cell line) spleen (Tissue) A375 (Cell line) prostate gland (Tissue) GM23248 (Cell line) transverse colon (Tissue) ovary (Tissue) esophagus squamous epithelium (Tissue) esophagus muscularis mucosa (Tissue) right lobe of liver (Tissue) gastroesophageal sphincter (Tissue) upper lobe of left lung (Tissue) neural progenitor cell (In vitro differentiated cells) testis (Tissue) smooth muscle cell (In vitro differentiated cells) mesenchymal stem cell (In vitro differentiated cells) body of pancreas (Tissue) stomach (Tissue) OCI-LY7 (Cell line) vagina (Tissue) trophoblast cell (In vitro differentiated cells) Peyer's patch (Tissue) mesendoderm (In vitro differentiated cells) neuronal stem cell (In vitro differentiated cells) adrenal gland (Tissue) hepatocyte (In vitro differentiated cells) HT-29 (Cell line) sigmoid colon (Tissue) tibial nerve (Tissue) subcutaneous adipose tissue (Tissue) omental fat pad (Tissue)
ENST00000651323.1_5163_5177_+	5163–5177	549998.00	16.97	13.94	71.33	GM12878 (Cell line) K562 (Cell line) parietal lobe (Tissue) temporal lobe (Tissue) spinal cord (Tissue) tongue (Tissue) occipital lobe (Tissue) diencephalon (Tissue) heart (Tissue) skin of body (Tissue) skeletal muscle tissue (Tissue) uterus (Tissue) metanephros (Tissue) lung (Tissue) cerebellum (Tissue) frontal cortex (Tissue) thyroid gland (Tissue) urinary bladder (Tissue) liver (Tissue) GM23338 (Cell line) Karpas-422 (Cell line) spleen (Tissue) A375 (Cell line) prostate gland (Tissue) GM23248 (Cell line) transverse colon (Tissue) ovary (Tissue) esophagus squamous epithelium (Tissue) esophagus muscularis mucosa (Tissue) right lobe of liver (Tissue) gastroesophageal sphincter (Tissue) upper lobe of left lung (Tissue) neural progenitor cell (In vitro differentiated cells) testis (Tissue) smooth muscle cell (In vitro differentiated cells) mesenchymal stem cell (In vitro differentiated cells) body of pancreas (Tissue) stomach (Tissue) OCI-LY7 (Cell line) vagina (Tissue) trophoblast cell (In vitro differentiated cells) Peyer's patch (Tissue) mesendoderm (In vitro differentiated cells) neuronal stem cell (In vitro differentiated cells) adrenal gland (Tissue) hepatocyte (In vitro differentiated cells) HT-29 (Cell line) sigmoid colon (Tissue) tibial nerve (Tissue) subcutaneous adipose tissue (Tissue) omental fat pad (Tissue)
ENST00000651323.1_5163_5185_+	5163–5185	115534.00	3.57	2.93	100.0	GM12878 (Cell line) K562 (Cell line) parietal lobe (Tissue) temporal lobe (Tissue) spinal cord (Tissue) tongue (Tissue) occipital lobe (Tissue) diencephalon (Tissue) heart (Tissue) skin of body (Tissue) skeletal muscle tissue (Tissue) uterus (Tissue) metanephros (Tissue) lung (Tissue) cerebellum (Tissue) frontal cortex (Tissue) thyroid gland (Tissue) urinary bladder (Tissue) liver (Tissue) GM23338 (Cell line) Karpas-422 (Cell line) spleen (Tissue) A375 (Cell line) prostate gland (Tissue) GM23248 (Cell line) transverse colon (Tissue) ovary (Tissue) esophagus squamous epithelium (Tissue) esophagus muscularis mucosa (Tissue) right lobe of liver (Tissue) gastroesophageal sphincter (Tissue) upper lobe of left lung (Tissue) neural progenitor cell (In vitro differentiated cells) testis (Tissue) smooth muscle cell (In vitro differentiated cells) mesenchymal stem cell (In vitro differentiated cells) body of pancreas (Tissue) stomach (Tissue) OCI-LY7 (Cell line) vagina (Tissue) trophoblast cell (In vitro differentiated cells) Peyer's patch (Tissue) mesendoderm (In vitro differentiated cells) neuronal stem cell (In vitro differentiated cells) adrenal gland (Tissue) hepatocyte (In vitro differentiated cells) HT-29 (Cell line) sigmoid colon (Tissue) tibial nerve (Tissue) subcutaneous adipose tissue (Tissue) omental fat pad (Tissue)
ENST00000651323.1_5199_5247_+	5199–5247	59366.00	1.83	1.51	45.04	GM12878 (Cell line) K562 (Cell line) parietal lobe (Tissue) temporal lobe (Tissue) spinal cord (Tissue) tongue (Tissue) occipital lobe (Tissue) diencephalon (Tissue) heart (Tissue) skin of body (Tissue) skeletal muscle tissue (Tissue) uterus (Tissue) metanephros (Tissue) lung (Tissue) cerebellum (Tissue) frontal cortex (Tissue) thyroid gland (Tissue) urinary bladder (Tissue) liver (Tissue) GM23338 (Cell line) Karpas-422 (Cell line) spleen (Tissue) A375 (Cell line) prostate gland (Tissue) GM23248 (Cell line) transverse colon (Tissue) ovary (Tissue) esophagus squamous epithelium (Tissue) esophagus muscularis mucosa (Tissue) right lobe of liver (Tissue) gastroesophageal sphincter (Tissue) upper lobe of left lung (Tissue) neural progenitor cell (In vitro differentiated cells) testis (Tissue) smooth muscle cell (In vitro differentiated cells) mesenchymal stem cell (In vitro differentiated cells) body of pancreas (Tissue) stomach (Tissue) OCI-LY7 (Cell line) vagina (Tissue) trophoblast cell (In vitro differentiated cells) Peyer's patch (Tissue) mesendoderm (In vitro differentiated cells) adrenal gland (Tissue) hepatocyte (In vitro differentiated cells) HT-29 (Cell line) sigmoid colon (Tissue) tibial nerve (Tissue) subcutaneous adipose tissue (Tissue) omental fat pad (Tissue) neuronal stem cell (In vitro differentiated cells)
ENST00000651323.1_5201_5247_+	5201–5247	72454.00	2.24	1.84	54.96	GM12878 (Cell line) K562 (Cell line) parietal lobe (Tissue) temporal lobe (Tissue) spinal cord (Tissue) tongue (Tissue) occipital lobe (Tissue) diencephalon (Tissue) heart (Tissue) skin of body (Tissue) skeletal muscle tissue (Tissue) uterus (Tissue) metanephros (Tissue) lung (Tissue) cerebellum (Tissue) frontal cortex (Tissue) thyroid gland (Tissue) urinary bladder (Tissue) liver (Tissue) GM23338 (Cell line) Karpas-422 (Cell line) spleen (Tissue) A375 (Cell line) prostate gland (Tissue) GM23248 (Cell line) transverse colon (Tissue) ovary (Tissue) esophagus squamous epithelium (Tissue) esophagus muscularis mucosa (Tissue) right lobe of liver (Tissue) gastroesophageal sphincter (Tissue) upper lobe of left lung (Tissue) neural progenitor cell (In vitro differentiated cells) testis (Tissue) smooth muscle cell (In vitro differentiated cells) mesenchymal stem cell (In vitro differentiated cells) body of pancreas (Tissue) stomach (Tissue) OCI-LY7 (Cell line) vagina (Tissue) trophoblast cell (In vitro differentiated cells) Peyer's patch (Tissue) mesendoderm (In vitro differentiated cells) neuronal stem cell (In vitro differentiated cells) adrenal gland (Tissue) hepatocyte (In vitro differentiated cells) HT-29 (Cell line) sigmoid colon (Tissue) tibial nerve (Tissue) subcutaneous adipose tissue (Tissue) omental fat pad (Tissue)
ENST00000651323.1_5214_5247_+	5214–5247	550757.00	17.00	13.94	100.0	GM12878 (Cell line) K562 (Cell line) parietal lobe (Tissue) temporal lobe (Tissue) spinal cord (Tissue) tongue (Tissue) occipital lobe (Tissue) diencephalon (Tissue) heart (Tissue) skin of body (Tissue) skeletal muscle tissue (Tissue) uterus (Tissue) metanephros (Tissue) lung (Tissue) cerebellum (Tissue) frontal cortex (Tissue) thyroid gland (Tissue) urinary bladder (Tissue) liver (Tissue) GM23338 (Cell line) Karpas-422 (Cell line) spleen (Tissue) A375 (Cell line) prostate gland (Tissue) GM23248 (Cell line) transverse colon (Tissue) ovary (Tissue) esophagus squamous epithelium (Tissue) esophagus muscularis mucosa (Tissue) right lobe of liver (Tissue) gastroesophageal sphincter (Tissue) upper lobe of left lung (Tissue) neural progenitor cell (In vitro differentiated cells) testis (Tissue) smooth muscle cell (In vitro differentiated cells) mesenchymal stem cell (In vitro differentiated cells) body of pancreas (Tissue) stomach (Tissue) OCI-LY7 (Cell line) vagina (Tissue) trophoblast cell (In vitro differentiated cells) Peyer's patch (Tissue) mesendoderm (In vitro differentiated cells) neuronal stem cell (In vitro differentiated cells) adrenal gland (Tissue) hepatocyte (In vitro differentiated cells) HT-29 (Cell line) sigmoid colon (Tissue) tibial nerve (Tissue) subcutaneous adipose tissue (Tissue) omental fat pad (Tissue)
ENST00000651323.1_5230_5247_+	5230–5247	134569.00	4.15	3.42	100.0	GM12878 (Cell line) K562 (Cell line) parietal lobe (Tissue) temporal lobe (Tissue) spinal cord (Tissue) tongue (Tissue) occipital lobe (Tissue) diencephalon (Tissue) heart (Tissue) skin of body (Tissue) skeletal muscle tissue (Tissue) uterus (Tissue) metanephros (Tissue) lung (Tissue) cerebellum (Tissue) frontal cortex (Tissue) thyroid gland (Tissue) urinary bladder (Tissue) liver (Tissue) GM23338 (Cell line) Karpas-422 (Cell line) spleen (Tissue) A375 (Cell line) prostate gland (Tissue) GM23248 (Cell line) transverse colon (Tissue) ovary (Tissue) esophagus squamous epithelium (Tissue) esophagus muscularis mucosa (Tissue) right lobe of liver (Tissue) gastroesophageal sphincter (Tissue) upper lobe of left lung (Tissue) neural progenitor cell (In vitro differentiated cells) testis (Tissue) smooth muscle cell (In vitro differentiated cells) mesenchymal stem cell (In vitro differentiated cells) body of pancreas (Tissue) stomach (Tissue) OCI-LY7 (Cell line) vagina (Tissue) trophoblast cell (In vitro differentiated cells) Peyer's patch (Tissue) mesendoderm (In vitro differentiated cells) neuronal stem cell (In vitro differentiated cells) adrenal gland (Tissue) hepatocyte (In vitro differentiated cells) HT-29 (Cell line) sigmoid colon (Tissue) tibial nerve (Tissue) subcutaneous adipose tissue (Tissue) omental fat pad (Tissue)
ENST00000651323.1_5233_5247_+	5233–5247	220919.00	6.82	5.60	79.2	GM12878 (Cell line) K562 (Cell line) parietal lobe (Tissue) temporal lobe (Tissue) spinal cord (Tissue) tongue (Tissue) occipital lobe (Tissue) diencephalon (Tissue) heart (Tissue) skin of body (Tissue) skeletal muscle tissue (Tissue) uterus (Tissue) metanephros (Tissue) lung (Tissue) cerebellum (Tissue) frontal cortex (Tissue) thyroid gland (Tissue) urinary bladder (Tissue) liver (Tissue) GM23338 (Cell line) Karpas-422 (Cell line) spleen (Tissue) A375 (Cell line) prostate gland (Tissue) GM23248 (Cell line) transverse colon (Tissue) ovary (Tissue) esophagus squamous epithelium (Tissue) esophagus muscularis mucosa (Tissue) right lobe of liver (Tissue) gastroesophageal sphincter (Tissue) upper lobe of left lung (Tissue) neural progenitor cell (In vitro differentiated cells) testis (Tissue) smooth muscle cell (In vitro differentiated cells) mesenchymal stem cell (In vitro differentiated cells) body of pancreas (Tissue) stomach (Tissue) OCI-LY7 (Cell line) vagina (Tissue) trophoblast cell (In vitro differentiated cells) Peyer's patch (Tissue) mesendoderm (In vitro differentiated cells) neuronal stem cell (In vitro differentiated cells) adrenal gland (Tissue) hepatocyte (In vitro differentiated cells) HT-29 (Cell line) sigmoid colon (Tissue) tibial nerve (Tissue) subcutaneous adipose tissue (Tissue) omental fat pad (Tissue)