ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 1362.00 75.12 1.12 100.0 HCN2-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 1.00 10.00 0.00 100.0 SLC49A4-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 106.00 43.80 0.09 100.0 ATP5MC3-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 992.00 89.69 0.82 100.0 CDC25A-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 1.00 2.86 0.00 100.0 RUNX3-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 8.00 29.63 0.01 100.0 BLOC1S4-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 26.00 17.22 0.02 100.0 ATAD5-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 62.00 51.24 0.05 100.0 SLITRK5-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 152.00 64.14 0.13 100.0 HASPIN-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 83.00 89.25 0.07 100.0 ATG101-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 12.00 32.43 0.01 100.0 PRICKLE1-201 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 597.00 58.82 0.49 100.0 PBLD-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 83.00 32.81 0.07 98.81 MIRLET7BHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 1.00 1.52 0.00 100.0 MIR375-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 65.00 98.48 0.05 100.0 MIR375-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 2104.00 77.98 1.74 100.0 MIR30E-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 503.00 18.64 0.41 100.0 MIR30E-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 1.00 20.00 0.00 100.0 MIR29A-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 50.00 84.75 0.04 100.0 MIR345-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 10007.00 99.05 8.25 100.0 MIR16-2-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 74.00 9.74 0.06 100.0 MIR340-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 638.00 83.95 0.53 100.0 MIR340-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 80.00 54.42 0.07 100.0 MIR107-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 7.00 87.50 0.01 100.0 MIR381-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 3554.00 94.37 2.93 99.05 MIR103A2-201 miRNA neural progenitor cell (In vitro differentiated cells)