ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 15.00 0.05 0.01 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 1696.00 5.90 1.40 53.48 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 25.00 4.64 0.02 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 20.00 3.23 0.02 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 17.00 0.75 0.01 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 2299.00 25.99 1.90 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 105.00 45.85 0.09 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 244145.00 78.54 201.36 94.29 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 198.00 0.06 0.16 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 4555.00 14.89 3.76 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 661.00 27.22 0.55 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 59.00 2.79 0.05 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 2573.00 35.10 2.12 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 924.00 12.61 0.76 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 42.00 0.57 0.03 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 11303.00 97.90 9.32 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA neural progenitor cell (In vitro differentiated cells)