ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 8.00 0.01 0.01 100.0 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 58.00 0.07 0.05 100.0 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 2423.00 3.12 2.00 100.0 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 208.00 0.27 0.17 100.0 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 79.00 0.10 0.07 100.0 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 21101.00 27.13 17.40 67.3 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 1659.00 2.13 1.37 100.0 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 28090.00 36.12 23.17 65.13 ENST00000651540 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 3.00 2.14 0.00 100.0 MIRLET7A1HG-203 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 409.00 50.49 0.34 100.0 MEG8-225 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 564525.00 85.33 465.60 100.0 SNHG29-232 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 173.00 0.03 0.14 100.0 SNHG29-232 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 21.00 0.00 0.02 100.0 SNHG29-232 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 4.00 0.00 0.00 100.0 SNHG29-232 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 51050.00 7.72 42.10 100.0 SNHG29-232 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 36710.00 5.55 30.28 100.0 SNHG29-232 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 636.00 0.18 0.52 100.0 SNHG14-234 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 149119.00 41.74 122.99 98.67 SNHG14-234 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 50.00 0.01 0.04 100.0 SNHG14-234 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 31111.00 8.71 25.66 100.0 SNHG14-234 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 58092.00 16.26 47.91 100.0 SNHG14-234 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 82221.00 23.01 67.81 99.63 SNHG14-234 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 3709.00 5.38 3.06 50.59 ENST00000655317 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 11783.00 17.08 9.72 100.0 ENST00000655317 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 4863.00 7.05 4.01 45.19 ENST00000655317 lncRNA neural progenitor cell (In vitro differentiated cells)