ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 293628.00 40.34 242.17 97.97 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 90862.00 12.48 74.94 100.0 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 160670.00 22.07 132.51 97.37 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 605.00 0.08 0.50 100.0 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 3304.00 0.45 2.73 28.59 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 36649.00 5.03 30.23 73.54 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 32195.00 4.42 26.55 57.52 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 3190.19 18.02 2.63 73.24 5S_rRNA.20-201 rRNA pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 4111.00 14.56 3.39 100.0 HSPA9-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 17329.00 61.37 14.29 92.93 HSPA9-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 261.00 0.01 0.22 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 289.00 0.01 0.24 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 5930.00 0.17 4.89 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 1024.00 0.03 0.84 22.76 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 40281.00 1.16 33.22 99.43 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 302.00 0.01 0.25 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 104.00 0.00 0.09 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 6143.00 0.18 5.07 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 2258085.00 65.13 1862.38 99.56 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 919.00 0.03 0.76 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 16187.00 0.47 13.35 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 10573.00 0.30 8.72 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1630.00 0.05 1.34 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 29871.00 0.86 24.64 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 83.00 0.00 0.07 100.0 GAS5-230 retained intron neural progenitor cell (In vitro differentiated cells)