ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 359.00 0.10 15.37 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 6100.00 1.69 261.16 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 25.00 0.01 1.07 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 6.00 11.11 0.26 100.0 FTX-219 lncRNA GM23248 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 32.00 59.26 1.37 94.12 FTX-219 lncRNA GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 72.00 5.90 3.08 24.83 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 136.00 11.15 5.82 88.89 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 72.00 5.90 3.08 47.37 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 218.00 17.87 9.33 75.17 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 183.00 15.00 7.83 94.82 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 44.00 3.61 1.88 100.0 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 44.00 3.61 1.88 100.0 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 77.00 6.31 3.30 100.0 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 1320.00 15.25 56.51 78.57 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 20.00 0.23 0.86 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 250.00 2.89 10.70 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 536.00 6.19 22.95 55.49 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 10.00 0.12 0.43 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 111.00 1.28 4.75 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 25.00 0.29 1.07 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 29.00 0.34 1.24 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 14.00 0.16 0.60 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 962.00 11.12 41.19 49.18 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 265.00 3.06 11.35 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 2970.00 34.32 127.16 74.49 ENST00000651540 lncRNA GM23248 (Cell line)