ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 332.00 17.22 14.21 100.0 HSPA9-211 retained intron GM23248 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 1145.00 59.39 49.02 84.81 HSPA9-211 retained intron GM23248 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 5179.00 91.05 221.73 100.0 DNM3OS-205 lncRNA GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 30.00 0.01 1.28 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 1407.00 0.39 60.24 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 6.00 0.00 0.26 31.58 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 727.00 0.20 31.13 96.8 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 44.00 0.01 1.88 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 9.00 0.00 0.39 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 544.00 0.15 23.29 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 328131.00 90.87 14048.42 99.82 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 118.00 0.03 5.05 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 644.00 0.18 27.57 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 428.00 0.12 18.32 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 293.00 0.08 12.54 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 1669.00 0.46 71.46 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 8.00 0.00 0.34 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 17.00 0.00 0.73 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 172.00 0.05 7.36 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 457.00 0.13 19.57 61.26 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 1908.00 0.53 81.69 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 548.00 0.15 23.46 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 986.00 0.27 42.21 98.9 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 11517.00 3.19 493.08 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 26.00 0.01 1.11 100.0 GAS5-230 retained intron GM23248 (Cell line)