ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 28.00 90.32 1.20 100.0 SLC49A4-201 protein coding GM23248 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 222.00 39.22 9.50 100.0 ATP5MC3-201 protein coding GM23248 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 193.00 97.97 8.26 100.0 CDC25A-201 protein coding GM23248 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 37.00 15.95 1.58 100.0 ATAD5-201 protein coding GM23248 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 27.00 34.62 1.16 100.0 SLITRK5-201 protein coding GM23248 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 179.00 71.60 7.66 100.0 HASPIN-201 protein coding GM23248 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 567.00 98.10 24.28 100.0 ATG101-201 protein coding GM23248 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 13.00 81.25 0.56 100.0 PRICKLE1-201 protein coding GM23248 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 112.00 35.22 4.80 100.0 PBLD-204 protein coding GM23248 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 957.00 7.74 40.97 96.18 MIRLET7BHG-201 lncRNA GM23248 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 10757.00 87.02 460.54 99.7 MIRLET7BHG-201 lncRNA GM23248 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 1.00 50.00 0.04 100.0 MIR375-201 miRNA GM23248 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 323.00 76.00 13.83 100.0 MIR30E-201 miRNA GM23248 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 90.00 21.18 3.85 100.0 MIR30E-201 miRNA GM23248 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 131.00 58.22 5.61 100.0 MIR29A-201 miRNA GM23248 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 10.00 100.00 0.43 100.0 MIR345-201 miRNA GM23248 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 794.00 98.15 33.99 100.0 MIR16-2-201 miRNA GM23248 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 21.00 84.00 0.90 100.0 MIR340-201 miRNA GM23248 (Cell line)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 2.00 8.00 0.09 100.0 MIR340-201 miRNA GM23248 (Cell line)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 40.00 66.67 1.71 100.0 MIR107-201 miRNA GM23248 (Cell line)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 233.00 93.95 9.98 97.9 MIR381-201 miRNA GM23248 (Cell line)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 494.00 90.15 21.15 95.74 MIR103A2-201 miRNA GM23248 (Cell line)
ENST00000362155.4 ENST00000362155.4_9_29_+ 9–29 23.00 69.70 0.98 100.0 MIR369-201 miRNA GM23248 (Cell line)
ENST00000362155.4 ENST00000362155.4_44_64_+ 44–64 4.00 12.12 0.17 100.0 MIR369-201 miRNA GM23248 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_38_+ 14–38 9.00 34.62 0.39 100.0 MIR425-201 miRNA GM23248 (Cell line)